SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61790 | AT | Annotation by Michelle Graham. TAIR10: Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346 | SoyBase | E_val: 1.00E-156 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0015157 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oligosaccharide transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2603 | KOG | Oligosaccharyltransferase, gamma subunit | JGI | ISS | |
| PTHR12692 | Panther | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED | JGI | ISS | |
| PF04756 | PFAM | OST3 / OST6 family | JGI | ISS | |
| UniRef100_B9RXQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tumor suppressor candidate, putative n=1 Tax=Ricinus communis RepID=B9RXQ7_RICCO | SoyBase | E_val: 2.00E-165 | ISS |
| UniRef100_I1NGA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGA5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g27980 not represented in the dataset |
Glyma20g27980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g39750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g141900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g27980.1 sequence type=CDS gene model=Glyma20g27980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCGTTCTCGAAGCTCTTGTTTCTGATACTGATGGTGTTCGTCTCATCCGCGATCGCCTCCGACGACGAAAGAGTGAGCGAATTGGTGTCCCTGCAATCGAGATCCAAATCGGGCCTAATCCGGCTGAACGACCAATCCCTGGCCCGCTTCCTCACCGCCGTGAAAACCCCTCGCCCTTACTCCATCCTCCTCTTCTTCGACGCGGCGCAGCTCCACGACAAGCCGGAGCTCCGCCTCACGGAGCTCCGCAACGAATTCTCCATCGTCTCCTCCTCCTTCCTGGCCAACAACAACCCTCCCAACACCAACAAGCTCTTCTTCTGCGACATCGAGTTCAAGGAGTCCCAGCTCTCCTTCTCCCAGTTCGGCGTCAACGCCCTCCCCCACATCCGCCTCATTGGGCCCAACATGGGCCTCAAGGACTCCGAGTCCATGGACCAGGGCGACTTCTCCCGCCTCGCCGACTCCATGGCCGAGTTCGTCGAGTCCAAGACTAACCTCTCCGTGGGCCCCATCCACCGCCCCCCCCTCTTCTCCCGCAACCAGCTCGTCCTCTTAACCGTCTTCATCCTCCTCTGGATCCCCTTTCTCCTCAAGAAGCTTCTCGCCGGACAGACCATACTCCACGACCCTAAGGTCTGGTTGGCAGGTTCAGTTTTCGTTTACTTCTTCAGCGTTTCTGGTGCAATGCACAACATCATTCGGAAGATGCCCATGTTCCTCGTCGACCGCAACGACCCTTCCAAGCTCGTGTTTTTTTACCAGGGCTCAGGGATGCAGCTTGGTGCAGAGGGCTTCGCTGTGGGCTTCTTGTACACCGTCGTGGGCCTGCTCTTGGCGTTTATGACCCACGGGCTCGTTAGGGTTAGCAACGTCAGCGTGCAGAGGGTGGTTATGATTTTCGCGCTCTTGGTTTCGTTTTTGGCTGTCAAGCAGGTTGTTTACTTGGATAATTGGAAGACAGGGTATGGGATTCACGGCTTTTGGCCCTCTAGCTGGAATTAA
>Glyma20g27980.1 sequence type=predicted peptide gene model=Glyma20g27980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSPFSKLLFLILMVFVSSAIASDDERVSELVSLQSRSKSGLIRLNDQSLARFLTAVKTPRPYSILLFFDAAQLHDKPELRLTELRNEFSIVSSSFLANNNPPNTNKLFFCDIEFKESQLSFSQFGVNALPHIRLIGPNMGLKDSESMDQGDFSRLADSMAEFVESKTNLSVGPIHRPPLFSRNQLVLLTVFILLWIPFLLKKLLAGQTILHDPKVWLAGSVFVYFFSVSGAMHNIIRKMPMFLVDRNDPSKLVFFYQGSGMQLGAEGFAVGFLYTVVGLLLAFMTHGLVRVSNVSVQRVVMIFALLVSFLAVKQVVYLDNWKTGYGIHGFWPSSWN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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