Glyma20g27950 - SoyBase

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Report for Sequence Feature Glyma20g27950

Feature Type:	gene_model
Chromosome:	Gm20
Start:	36940856
stop:	36943164
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g27950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02890	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin family protein \| chr4:1278747-1279664 REVERSE LENGTH=305	SoyBase	E_val: 0	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
KOG0005	KOG	Ubiquitin-like protein	JGI		ISS
PTHR10666	Panther	UBIQUITIN	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
UniRef100_Q3E7T8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyubiquitin 14 n=13 Tax=core eudicotyledons RepID=UBQ14_ARATH	SoyBase	E_val: 0	ISS
UniRef100_Q3E7T8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Polyubiquitin 14 n=13 Tax=core eudicotyledons RepID=UBQ14_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g27950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g27950

Paralog	Evidence	Comments
Glyma10g39780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g27950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g141600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g27950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g27950

Limit To All Plant Sequences

>Glyma20g27950.3   sequence type=transcript   gene model=Glyma20g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTACCACGCAAATTGCAATTCTCAATTTCCTAGAAGGACTCTCCGAAAATGCATCCAATACCAAATATTACCCGTGTCATAGGCACCAAGTGACACCATACATGAACACGCGTCACAATATGACTGGAGAAGGGTTCCACACCTTATGCTATAAAACGCCCCACACCCCTCCTCCTTCCTTCGCAGTTCAATTCCAATATATTCCATTCTCTCTGTGTATTTCCCTACCTCTCCCTTCAAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAGCAACGTCTCATTTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGACTACAACATTCAGAAGGAGAGTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACACTCACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTAGAAGTCGAAAGCTCCGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGGGGGTTTTAAGCTCGTTGTGTAATGTTGGATGTGTTCCCAAAACATTTGAAGAACTTTGATGTTTAATGGGTCTGTAATAATGTCCCTTGAAAATAAGTTCGGTTTGTGTTGAACTCAATTGTGTCCCATTAATAATAGTACTCTAATATCCCACCTACGTTTGTTATGAATGTGTGAAATATGAAATGATTAATTGTCATATCGTGTTGTTTTAATTTGTTCTGAATTGGCTAGAGGGGACTTAATATGGATTTTTTATTCGATTTGTGTGGTCTTCCATGCTTGTCATGAAGGAAAAACAGGGATGAGTTGTGTGAAGGATGGTGATCATCCTTCGAATTCGATGGTATTATAGGTTGAAGTCGGTCATTGATAGATGTTATGTAAAGGCAACAATGAAATTTGAACAAACTGAGATCATTGTGGTGATCAATTGAAATGGGAAGGTTCTTCATCAACTGTGGAGTATTGATGGGTAGGAGACAACTAGCTCAAGGCATAAGGGTTTTTTGTTTCATACTTAAAATCAATTTCCCATACTATCAATAAGTTTCAATATAAAATTTA

Coding sequences of Glyma20g27950

Limit To All Plant Sequences

>Glyma20g27950.1   sequence type=CDS   gene model=Glyma20g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAGCAACGTCTCATTTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGACTACAACATTCAGAAGGAGAGTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACACTCACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTAGAAGTCGAAAGCTCCGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTTGCTGACTACAACATCCAGAAGGAGTCAACTCTCCACTTGGTGTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACGGGTAAGACTATTACCCTCGAGGTGGAGAGCTCTGACACCATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGGGGGTTTTAA

>Glyma20g27950.3   sequence type=CDS   gene model=Glyma20g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAGCAACGTCTCATTTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGACTACAACATTCAGAAGGAGAGTACTCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACACTCACCGGCAAGACCATAACCCTAGAGGTTGAAAGCTCCGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAATCAACCCTTCACCTCGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTAGAAGTCGAAAGCTCCGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGGGGGTTTTAA

Predicted protein sequences of Glyma20g27950

Limit To All Plant Sequences

>Glyma20g27950.1   sequence type=predicted peptide   gene model=Glyma20g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

>Glyma20g27950.3   sequence type=predicted peptide   gene model=Glyma20g27950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

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