SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54520 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:22146781-22149089 REVERSE LENGTH=457 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0265 | KOG | U5 snRNP-specific protein-like factor and related proteins | JGI | ISS | |
| PTHR19852 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR19852:SF16 | Panther | JGI | ISS | ||
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_F4K0D3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transducin/WD40 domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4K0D3_ARATH | SoyBase | E_val: 3.00E-178 | ISS |
| UniRef100_UPI000233D1CA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D1CA related cluster n=1 Tax=unknown RepID=UPI000233D1CA | SoyBase | E_val: 0 | ISS |
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Glyma20g27821 not represented in the dataset |
Glyma20g27821 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g140800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g27821.1 sequence type=CDS gene model=Glyma20g27821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCTTCTGTGCAACGCTTATTCGAATGCCTCAGACGACGAAGAAGAAGAACAACCAAAACGACAGAGAGTATCCCTCTCTTCCCCTAACCCGCCAAAACGACACCTTCCTTTGTCTTCTCCTCCTTCATTCAACAACCAAACACAAGCTCCCATGCTCGGAAGATACATTTCCAAACGACAGCGCGCATTGATGGGCTCCACCCCTGCCCCTCTTCCTGAACCGGTTCCTGTTCCGTCTCCGTTCACGCTATCTGGGAGTATCTTGGATGCTGATATACACCATAATATTTTATCATTGTTGAAAAGTAAAGCAAAGGGTCATCAAAGCCCAAACCTGATATCTGAAAAGCTATCTGCAACTCTATACGGGCATACAAAAGCTGTCAATGCTATACATTGGTCATCAAGTCATGCTCACCTCCTTGCATCTGCTGGGATGGATCATGCGGTTTGCATATGGAATGTATGGAGCAGAAATCAGAAGAAAGCATGTGTGCTAAACTTCCACAATGCAGCAGTCAAAGATGTGAAATGGTCTCAGCAAGGGCACTTCCTACTTTCTTGTGGGTATGATTGCACGTCTAGGTTAATTGATGTTGAAAAGGGATTGGAGACTCAGGTTTTCAGAGAAGATCAAATTGTTGGAGTTATAAAGTTCCATCCAGACAATTCAAATCTCTTCCTTTCTGGAGGGTCAAAGGGCCAGGTCAAACTTTGGGATGCCAGAACTGGCAAAATAGTGCACAATTATAATCGAAATTTAGGTCCAATTCTGGATGTTGAGTTCACAATGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTCAAAGTAATGCCAGCGAGAATGCTATTATTGTTTGGGATGTGTCAAGAGAGATACCATTGTCTAATCAGGTTTATGTGGAAGCTTATACGTGTCCCTGTGTGAGGCGCCACCCATTTGATTCAACTTTTGTTGCCCAATCAAATGGGAATTATGTTGCAATCTTTACTACCAACCCACCTTACAGACTCAACAAATGTAAGCGATATGAGGGACATGTGGTCTCTGGGTTCCCAGTCAAGTGCAATTTCAGCTTGGATGGGAAAAAACTCGCTTCTGGCTCTTCAGATGGTTCTATCTACCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATCAAGGCCCATGACCAGGCATGCATAGATGTTGCCTTCCACCCTGTTATACCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAGTAG
>Glyma20g27821.1 sequence type=predicted peptide gene model=Glyma20g27821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLLCNAYSNASDDEEEEQPKRQRVSLSSPNPPKRHLPLSSPPSFNNQTQAPMLGRYISKRQRALMGSTPAPLPEPVPVPSPFTLSGSILDADIHHNILSLLKSKAKGHQSPNLISEKLSATLYGHTKAVNAIHWSSSHAHLLASAGMDHAVCIWNVWSRNQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLIDVEKGLETQVFREDQIVGVIKFHPDNSNLFLSGGSKGQVKLWDARTGKIVHNYNRNLGPILDVEFTMNGKQFISSSDVSQSNASENAIIVWDVSREIPLSNQVYVEAYTCPCVRRHPFDSTFVAQSNGNYVAIFTTNPPYRLNKCKRYEGHVVSGFPVKCNFSLDGKKLASGSSDGSIYLYDYQSSKVVKKIKAHDQACIDVAFHPVIPNVIASCSWDGSILVFE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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