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Report for Sequence Feature Glyma20g27596

Feature Type:gene_model
Chromosome:Gm20
Start:36733101
stop:36737946
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g27596
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38830AT Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 26 | chr4:18122339-18124943 FORWARD LENGTH=665 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0580 KOG Serine/threonine protein kinase JGI ISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF430Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF01657PFAM Domain of unknown function DUF26 JGI ISS
UniRef100_G8A0W8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=3 Tax=Medicago truncatula RepID=G8A0W8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NG72UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NG72_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g27596
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g27596 not represented in the dataset
Glyma20g27596 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g27596
ParalogEvidenceComments
Glyma10g39920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g27596 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g139000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g27596
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g27596
>Glyma20g27596.2   sequence type=transcript   gene model=Glyma20g27596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTATAGCTACTTATTGCCTTACGAACACTTGGGCAACCTTACCAACCTAGTCCGGATCGAGGAACAGTACCAAAATGGCCTTGATTCCTTCCATGATGCTGTTTTCATTTCTTTCTTTCCTTGTCATACTCAAATCTGAAGCCAACAACGACCAGCTACAATTCGTGTACCATTATTGCAACAACGAGTACGGAAACATTACCACCGAAACCTACTCAGACAACCGGAATAACCTTTTGTCCAATATGTATTATGACAAAGAAAATGACTACGGCTTCTACAATTCCTCCTATGGACAAGACCCTGACAAAGTTTACGCCATCGGTTTCTGCAGAGGCGATGCAAATCTAGATAAGTGCCGTAGTTGCCTGGAAAAGTCCGCAGTCCTTCTCAGAGAGCGGTGTCCAGTACAGAAAGAGGGGATCGGGTGGTTTGACGAGTGCATGTTACGCTACACCAACCACTCAATATTTGGTGTCATGGTAACTCAACCTAACAACATCATGTGCAACACAAAAAACGCCCCAAAGGATCCTAGATCGGCTGCTGGTTTTGATCAAGTGGTCCACAACCTGTTGAACGAACTGAGAAACAGGACGACGACAGTGGCAGACCCAGAAAGTGATTCCAGTCGAAGTCGCAAGTTCTTCGCTGAAGGAGATGCTCCGGTTCAATCAAGCAATGTGACCATACATGCTCTGATTCAGTGCACACCTGATATTTCTAGTCAAAACTGTACTCGATGCTTGGAGCACGCTATGACGAATATTTTATATTGTGATGGAAAAAGGGGTGGTCGATATCTAGGACCAAGCTGTTCTGTTAGATATGAGATCTATCCCTTTTTTGAGCCCATAGTCCACCATGCACCACCACCACAACCTGCCACTCAGGTTACCACGACCACTGGGAAAGAAAAGAGCAACCCATCACGAACTATCATTGCTATAGTTGTGCCAGTCGTTGCCGTTGTCGTACTCCTGGTGGCCTTTACCTACAATTATTTAGGAGCGAGAAGACGAAGACAAAAACCTTTTCAAAGTGAAGGAGGCGAAGGTGAACTTGATAATGACATTAAAATAGACGAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCAACTAATAACTTCTCTGATGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTCTCTGATGGACAAGAAATAGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGAATGAAATTCTGCTAACAGGGAAGCTTCAACACCGAAACTTAGTTAGACTGCTTGGCTTTTGTTTTTCAAGAAGAGAAAGGTTATTGATATATGAATTCGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAATCGTGTGAATTTGAATTGGGAAAGACGCTATAATATTATAAGGGGTATTGCTCGAGGTCTTCTTTACCTTCATGAAGATTCTCGATTACAAGTTGTTCATCGTGATCTCAAAACAAGTAACATTTTGTTAGATGAAGAGTTGAACCCTAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTCAAGCCAGTACAAATACAATTGTCGGGACCTTTGGATATATGGCTCCTGAGTACATTAAATATGGACAGTTTTCAGTCAAGTCAGATGTCTTTAGTTTTGGCGTAATGATTCTGGAAATTGTATGCGGACAAAGAAACAGTGAGATTCGTGGTAGCGAGGAAAATGCACAAGATCTATTAAGCTTTTTGAGCAATTTTTTTGCAGGCATGGAAAAATTGGAGGGGAGGGACAGTTTCAAATATTGTAGATGACACATTAAAGGATTATTCTTGGAATGAAATAAGGAGATGCATTCACATTGGATTACTGTGTGTACAGGAAGATATAGCTGATAGACCAACTATGAATACCGTTTTACTGATGCTTAACAGTGACTCTTTCCCACTTGCTAAACCTTCTGAACCTGCATTTTTAATGCGTGATAAGAGTTCTTTGCCTACGGCTATGCTGTCTGGTGGGCAACATTCAGAGGTAACAAGGTCAGGTTATTCAGGAAGTCAATCTGCTCAAGAATCATCAATTATGGCTCCAATCACCGAGCCATATCCTCGTTAGATATTTGTCATAAAATTTACTTTTTATGCCAATTGGGCAAAAAGGAAATGATCAATTATTGAAACTTCATCCTTTGGAGTTAACAACGTAACCACCTACCCTTCCTGGTTAATTATTTTGTAGGGTTTGTCCTAGCACTTCGCTCCACTTTTTTTTTTTTTTTTTTTTTTTTGTGTAGTGTTTGCTTTCAAACTTCGGTGTTTTCTTTGTGAACTATATATAAACGAAACATATATGTTTGGAAATTAATAAATTTGAGTAAATATTTGTTTTTCCGAA
Coding sequences of Glyma20g27596
>Glyma20g27596.1   sequence type=CDS   gene model=Glyma20g27596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGATTCCTTCCATGATGCTGTTTTCATTTCTTTCTTTCCTTGTCATACTCAAATCTGAAGCCAACAACGACCAGCTACAATTCGTGTACCATTATTGCAACAACGAGTACGGAAACATTACCACCGAAACCTACTCAGACAACCGGAATAACCTTTTGTCCAATATGTATTATGACAAAGAAAATGACTACGGCTTCTACAATTCCTCCTATGGACAAGACCCTGACAAAGTTTACGCCATCGGTTTCTGCAGAGGCGATGCAAATCTAGATAAGTGCCGTAGTTGCCTGGAAAAGTCCGCAGTCCTTCTCAGAGAGCGGTGTCCAGTACAGAAAGAGGGGATCGGGTGGTTTGACGAGTGCATGTTACGCTACACCAACCACTCAATATTTGGTGTCATGGTAACTCAACCTAACAACATCATGTGCAACACAAAAAACGCCCCAAAGGATCCTAGATCGGCTGCTGGTTTTGATCAAGTGGTCCACAACCTGTTGAACGAACTGAGAAACAGGACGACGACAGTGGCAGACCCAGAAAGTGATTCCAGTCGAAGTCGCAAGTTCTTCGCTGAAGGAGATGCTCCGGTTCAATCAAGCAATGTGACCATACATGCTCTGATTCAGTGCACACCTGATATTTCTAGTCAAAACTGTACTCGATGCTTGGAGCACGCTATGACGAATATTTTATATTGTGATGGAAAAAGGGGTGGTCGATATCTAGGACCAAGCTGTTCTGTTAGATATGAGATCTATCCCTTTTTTGAGCCCATAGTCCACCATGCACCACCACCACAACCTGCCACTCAGGTTACCACGACCACTGGGAAAGAAAAGAGCAACCCATCACGAACTATCATTGCTATAGTTGTGCCAGTCGTTGCCGTTGTCGTACTCCTGGTGGCCTTTACCTACAATTATTTAGGAGCGAGAAGACGAAGACAAAAACCTTTTCAAAGTGAAGGAGGCGAAGGTGAACTTGATAATGACATTAAAATAGACGAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCAACTAATAACTTCTCTGATGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTCTCTGATGGACAAGAAATAGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGAATGAAATTCTGCTAACAGGGAAGCTTCAACACCGAAACTTAGTTAGACTGCTTGGCTTTTGTTTTTCAAGAAGAGAAAGGTTATTGATATATGAATTCGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAATCGTGTGAATTTGAATTGGGAAAGACGCTATAATATTATAAGGGGTATTGCTCGAGGTCTTCTTTACCTTCATGAAGATTCTCGATTACAAGTTGTTCATCGTGATCTCAAAACAAGTAACATTTTGTTAGATGAAGAGTTGAACCCTAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTCAAGCCAGTACAAATACAATTGTCGGGACCTTTGGATATATGGCTCCTGAGTACATTAAATATGGACAGTTTTCAGTCAAGTCAGATGTCTTTAGTTTTGGCGTAATGATTCTGGAAATTGTATGCGGACAAAGAAACAGTGAGATTCGTGGTAGCGAGGAAAATGCACAAGATCTATTAAGCTTTGCATGGAAAAATTGGAGGGGAGGGACAGTTTCAAATATTGTAGATGACACATTAAAGGATTATTCTTGGAATGAAATAAGGAGATGCATTCACATTGGATTACTGTGTGTACAGGAAGATATAGCTGATAGACCAACTATGAATACCGTTTTACTGATGCTTAACAGTGACTCTTTCCCACTTGCTAAACCTTCTGAACCTGCATTTTTAATGCGTGATAAGAGTTCTTTGCCTACGGCTATGCTGTCTGGTGGGCAACATTCAGAGGTAACAAGGTCAGGTTATTCAGGAAGTCAATCTGCTCAAGAATCATCAATTATGGCTCCAATCACCGAGCCATATCCTCGTTAG

>Glyma20g27596.2   sequence type=CDS   gene model=Glyma20g27596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGATTCCTTCCATGATGCTGTTTTCATTTCTTTCTTTCCTTGTCATACTCAAATCTGAAGCCAACAACGACCAGCTACAATTCGTGTACCATTATTGCAACAACGAGTACGGAAACATTACCACCGAAACCTACTCAGACAACCGGAATAACCTTTTGTCCAATATGTATTATGACAAAGAAAATGACTACGGCTTCTACAATTCCTCCTATGGACAAGACCCTGACAAAGTTTACGCCATCGGTTTCTGCAGAGGCGATGCAAATCTAGATAAGTGCCGTAGTTGCCTGGAAAAGTCCGCAGTCCTTCTCAGAGAGCGGTGTCCAGTACAGAAAGAGGGGATCGGGTGGTTTGACGAGTGCATGTTACGCTACACCAACCACTCAATATTTGGTGTCATGGTAACTCAACCTAACAACATCATGTGCAACACAAAAAACGCCCCAAAGGATCCTAGATCGGCTGCTGGTTTTGATCAAGTGGTCCACAACCTGTTGAACGAACTGAGAAACAGGACGACGACAGTGGCAGACCCAGAAAGTGATTCCAGTCGAAGTCGCAAGTTCTTCGCTGAAGGAGATGCTCCGGTTCAATCAAGCAATGTGACCATACATGCTCTGATTCAGTGCACACCTGATATTTCTAGTCAAAACTGTACTCGATGCTTGGAGCACGCTATGACGAATATTTTATATTGTGATGGAAAAAGGGGTGGTCGATATCTAGGACCAAGCTGTTCTGTTAGATATGAGATCTATCCCTTTTTTGAGCCCATAGTCCACCATGCACCACCACCACAACCTGCCACTCAGGTTACCACGACCACTGGGAAAGAAAAGAGCAACCCATCACGAACTATCATTGCTATAGTTGTGCCAGTCGTTGCCGTTGTCGTACTCCTGGTGGCCTTTACCTACAATTATTTAGGAGCGAGAAGACGAAGACAAAAACCTTTTCAAAGTGAAGGAGGCGAAGGTGAACTTGATAATGACATTAAAATAGACGAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCAACTAATAACTTCTCTGATGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTCTCTGATGGACAAGAAATAGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGAATGAAATTCTGCTAACAGGGAAGCTTCAACACCGAAACTTAGTTAGACTGCTTGGCTTTTGTTTTTCAAGAAGAGAAAGGTTATTGATATATGAATTCGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAATCGTGTGAATTTGAATTGGGAAAGACGCTATAATATTATAAGGGGTATTGCTCGAGGTCTTCTTTACCTTCATGAAGATTCTCGATTACAAGTTGTTCATCGTGATCTCAAAACAAGTAACATTTTGTTAGATGAAGAGTTGAACCCTAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTCAAGCCAGTACAAATACAATTGTCGGGACCTTTGGATATATGGCTCCTGAGTACATTAAATATGGACAGTTTTCAGTCAAGTCAGATGTCTTTAGTTTTGGCGTAATGATTCTGGAAATTGTATGCGGACAAAGAAACAGTGAGATTCGTGGTAGCGAGGAAAATGCACAAGATCTATTAAGCTTTTTGAGCAATTTTTTTGCAGGCATGGAAAAATTGGAGGGGAGGGACAGTTTCAAATATTGTAGATGA
Predicted protein sequences of Glyma20g27596
>Glyma20g27596.1   sequence type=predicted peptide   gene model=Glyma20g27596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALIPSMMLFSFLSFLVILKSEANNDQLQFVYHYCNNEYGNITTETYSDNRNNLLSNMYYDKENDYGFYNSSYGQDPDKVYAIGFCRGDANLDKCRSCLEKSAVLLRERCPVQKEGIGWFDECMLRYTNHSIFGVMVTQPNNIMCNTKNAPKDPRSAAGFDQVVHNLLNELRNRTTTVADPESDSSRSRKFFAEGDAPVQSSNVTIHALIQCTPDISSQNCTRCLEHAMTNILYCDGKRGGRYLGPSCSVRYEIYPFFEPIVHHAPPPQPATQVTTTTGKEKSNPSRTIIAIVVPVVAVVVLLVAFTYNYLGARRRRQKPFQSEGGEGELDNDIKIDELLQFDFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGKLQHRNLVRLLGFCFSRRERLLIYEFVPNKSLDYFIFDPNNRVNLNWERRYNIIRGIARGLLYLHEDSRLQVVHRDLKTSNILLDEELNPKISDFGMARLFEINQTQASTNTIVGTFGYMAPEYIKYGQFSVKSDVFSFGVMILEIVCGQRNSEIRGSEENAQDLLSFAWKNWRGGTVSNIVDDTLKDYSWNEIRRCIHIGLLCVQEDIADRPTMNTVLLMLNSDSFPLAKPSEPAFLMRDKSSLPTAMLSGGQHSEVTRSGYSGSQSAQESSIMAPITEPYPR*

>Glyma20g27596.2   sequence type=predicted peptide   gene model=Glyma20g27596   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALIPSMMLFSFLSFLVILKSEANNDQLQFVYHYCNNEYGNITTETYSDNRNNLLSNMYYDKENDYGFYNSSYGQDPDKVYAIGFCRGDANLDKCRSCLEKSAVLLRERCPVQKEGIGWFDECMLRYTNHSIFGVMVTQPNNIMCNTKNAPKDPRSAAGFDQVVHNLLNELRNRTTTVADPESDSSRSRKFFAEGDAPVQSSNVTIHALIQCTPDISSQNCTRCLEHAMTNILYCDGKRGGRYLGPSCSVRYEIYPFFEPIVHHAPPPQPATQVTTTTGKEKSNPSRTIIAIVVPVVAVVVLLVAFTYNYLGARRRRQKPFQSEGGEGELDNDIKIDELLQFDFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGKLQHRNLVRLLGFCFSRRERLLIYEFVPNKSLDYFIFDPNNRVNLNWERRYNIIRGIARGLLYLHEDSRLQVVHRDLKTSNILLDEELNPKISDFGMARLFEINQTQASTNTIVGTFGYMAPEYIKYGQFSVKSDVFSFGVMILEIVCGQRNSEIRGSEENAQDLLSFLSNFFAGMEKLEGRDSFKYCR*






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