Glyma20g27580 - SoyBase

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Report for Sequence Feature Glyma20g27580

Feature Type:	gene_model
Chromosome:	Gm20
Start:	36716183
stop:	36720554
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g27580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21410	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 29 \| chr4:11402463-11405025 REVERSE LENGTH=679	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF430	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
UniRef100_G8A0W8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=3 Tax=Medicago truncatula RepID=G8A0W8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NG70	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NG70_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g27580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g27580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g138800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g27580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g27580

Limit To All Plant Sequences

>Glyma20g27580.1   sequence type=CDS   gene model=Glyma20g27580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAACCTAGTCCGGAGGAGGAGCACTACAATGTCCCCGGTTCCTTCCATGATGCTGTTTTCATTCATTTCTTTCCTTGCCATTCTCAAATCTGAAGCCCAGGATCAGCTAAATTTCGTGTACCATGAATGTAACAACCACTTCGGAAACTTCACCCCTGCAGGTGTCTACGGCAGCAACCTGAATACCCTCTTGTCCAAAGTGTATTCCCACGAAGAAATCGACAACGGCTACTACAATTTCTCGTATGGCCAAAACCCTAACAAAGCTTACGCCATCGGTTTCTGCAGAGGAGATGTTAAGCCAGATAAGTGCCGTCGCTGCCTGGATAAGTCCGCGGTCCTTCTCAGAGAGCGGTGCCCATTACAGAAAGAGGCCATTGCATGGTTTGACGCGTGCATGCTACGCTACACAAACCACTCAATATTTGGCGTCATGGTAACTCAACCTAACAACATCTTGTGCAACACAAATAACGTGTCGACGAAGGTGCTGGAACAGTTTGATCAAGCTGTGGACGACTTGTTGAGCAAGTTGAGTAACATGACGGTGGACGGCGGTGGCTCCCGCCGCAATAGCGAGTTCTTTGCGGAAGGAGATGCTCCAGTTCAATCAAGCAACACCACCATATATGCTCTACTTCAGTGCACACCTGATATTTCGAAACAAAACTGTACTGAATGCTTGCAGAGTGCTTTGTCAGAAATTTCGACATTTTGTGATGGAAAGATGGGTGGTCAATATCTAGGGCCAAGCTGTTCTGTTAGATATGAGACCTACCTCTTCTTTGAGCCCATAGTCGATGCACCAGCTCCAGCACCACAGCCTGCCACTGATCAGGTTACCACGCCCATTGGAGAAGAAAAGAGGAACCCATCACGAACCATCATTGCGATAGTCGTGCCAATGGTTGTCGTTATCGTACTCCTGGCCATTATGTACAATTATTTAGGAGCGAGAAGACGAAGACGCAACAAACCTATCCAAAATGAAGGTGAAGGTGATGATGATGAAGGGGAACTTGCTAATGACATTAAAACAGATGATCAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCAACAAATGACTTCTCTGACGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTTTCTGATGGACAAGAAATTGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGAATGAAATTTTGCTAACAGGGAGGCTTCAGCACCGAAACTTAGTTAGACTACTTGGATTTTGTTTTGCAAGAAGAGAAAGGTTATTGATATATGAGTTCGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAAACGTGTAAATTTGAATTGGGAGATACGCTACAAAATCATAAGAGGCATTGCTCGAGGTCTTCTTTATCTTCATGAAGATTCACGATTAAACGTTGTTCATCGTGATCTGAAAACAAGTAACATTTTGTTAGATGGAGAATTGAATCCTAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTGAAGCCAGTACAACTACAATTGTTGGGACCTTTGGATATATGGCTCCTGAATACATTAAACATGGACAGTTTTCTATCAAGTCAGATGTCTTTAGTTTTGGCGTTATGATTCTGGAAATAGTATGCGGCCAAAGAAACAGTCAGATTCGTGATAGCGAAGAAAACGCACAGGATTTATTAAGCTTTGCATGGAACAATTGGAGGGGAGGGACAGTTTCAAATATTGTAGATCCCACATTAAAGGATTATTCTTGGGATGAAATAAGGAGATGTATTCACATTGGATTACTGTGTGTACAGGAAGATATAGCTGATAGACCAACTATGAATACCGTTTTATTAATGCTTCATAGCAGCTCTTTCCCACTTGCTGAACCTTCTGAACCTGCGTTTTTAATGCGCCGTAAAAGTTCTTTGCCTATGATTATGTTGTCTGGCAGTGAGCAATATTCAGAGGTAACAAGATCAAGTGATTCAGGAAGTCAATATGCTCAAGGATCATCAATAGTTAAGACTCCAACCACTGAGCCATATCCTCGTTAG

Predicted protein sequences of Glyma20g27580

Limit To All Plant Sequences

>Glyma20g27580.1   sequence type=predicted peptide   gene model=Glyma20g27580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNLVRRRSTTMSPVPSMMLFSFISFLAILKSEAQDQLNFVYHECNNHFGNFTPAGVYGSNLNTLLSKVYSHEEIDNGYYNFSYGQNPNKAYAIGFCRGDVKPDKCRRCLDKSAVLLRERCPLQKEAIAWFDACMLRYTNHSIFGVMVTQPNNILCNTNNVSTKVLEQFDQAVDDLLSKLSNMTVDGGGSRRNSEFFAEGDAPVQSSNTTIYALLQCTPDISKQNCTECLQSALSEISTFCDGKMGGQYLGPSCSVRYETYLFFEPIVDAPAPAPQPATDQVTTPIGEEKRNPSRTIIAIVVPMVVVIVLLAIMYNYLGARRRRRNKPIQNEGEGDDDEGELANDIKTDDQLLQFDFATIKFATNDFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGRLQHRNLVRLLGFCFARRERLLIYEFVPNKSLDYFIFDPNKRVNLNWEIRYKIIRGIARGLLYLHEDSRLNVVHRDLKTSNILLDGELNPKISDFGMARLFEINQTEASTTTIVGTFGYMAPEYIKHGQFSIKSDVFSFGVMILEIVCGQRNSQIRDSEENAQDLLSFAWNNWRGGTVSNIVDPTLKDYSWDEIRRCIHIGLLCVQEDIADRPTMNTVLLMLHSSSFPLAEPSEPAFLMRRKSSLPMIMLSGSEQYSEVTRSSDSGSQYAQGSSIVKTPTTEPYPR*

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