SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G08170 | AT | Annotation by Michelle Graham. TAIR10: Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr4:5163707-5167000 REVERSE LENGTH=353 | SoyBase | E_val: 3.00E-162 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0032957 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| GO:0047325 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol tetrakisphosphate 1-kinase activity | SoyBase | N/A | ISS |
| GO:0052725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol-1,3,4-trisphosphate 6-kinase activity | SoyBase | N/A | ISS |
| GO:0052726 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol-1,3,4-trisphosphate 5-kinase activity | SoyBase | N/A | ISS |
| PTHR14217 | Panther | INOSITOL 1,3,4-TRIPHOSPHATE 5/6 KINASE | JGI | ISS | |
| PF05770 | PFAM | Inositol 1, 3, 4-trisphosphate 5/6-kinase | JGI | ISS | |
| UniRef100_A7X680 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inositol phosphate kinase n=1 Tax=Glycine max RepID=A7X680_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00005AE608 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00005AE608 related cluster n=1 Tax=unknown RepID=UPI00005AE608 | SoyBase | E_val: 0 | ISS |
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Glyma20g27310 not represented in the dataset |
Glyma20g27310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g40100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g136300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g27310.1 sequence type=CDS gene model=Glyma20g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCTCAACGGTGAAATCTCAAGTGGAGAAGAAGAGGAGAAACAAACGGGAACGACGACGTTTTCGTCGCAGAAAGTGGTCGTTGGCTACGCTTTAACGTCCAAGAAGAAAAAGAGCTTTCTGCAGCCAAGTTTCACTGGCCTCGCACGGAACAGGGGGATAAACTTTGTTGCTATTGATCTAAACAAGCCACTGCTAGAACAAGGTCCTTTTGATATTATCTTGCATAAGTTGTCAGGGGAGGAGTGGTGTGAGATTATTGAGGATTATAGGCAAAAACATCCAGAGGTAACTGTCCTTGATCCTCCGGATGCAATCCAACATTTACACAATCGCCAATCCATGCTGCAAGATGTGGTGGATCTGAACTTATCTGATTGTCATGGCAAGGTTGGTGTTCCACGTCAGCTAGTTATCCCAAAAGAGAAAGACCCCTCTAGTATCCCTTACGAAATCACTAAGGCTGGGATGAAGTTGCCATTAGTTGCAAAACCACTAGTTGTGGATGGCACTGCAAAGTCACATGAACTATTTCTTGCTTATGATGAATTCTCTCTTTCAGAGCTTGAACCTCCACTAGTTCTACAAGAGTTTGTCAATCATGGTGGTCTTCTCTTTAAGATTTACATTGTTGGGGAAACCATAAAGGTTGTGAAGCGTTTCTCTCTTCCTAACATCAGTAAGCATGAGGTATCAAAAGTTGCTGGTGTATTCCGTTTTCCAAGAGTTTCATGTGCAGCCGCTTCTGCAGATGATGCTGATTTAGATCCTAATATCGCTGAACATCCGCCAAGACCTTTATTGGAGAGGCTTGCGAGGGAGCTCCGCCATCGATTGGGACTGTGCTTGTTCAACATAGATATGATTCGAGAATATGGAACCAAGGATGTGTTTTACGTCATTGACATCAACTACTTTCCCGGATATGGAAAAATGCCAGACTATGAGCACGTATTTACAGATTTTCTACTTAGCCTAGTGCAGAGCAATTGTAAGAAGAAACTTGCTACCTAA
>Glyma20g27310.1 sequence type=predicted peptide gene model=Glyma20g27310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLNGEISSGEEEEKQTGTTTFSSQKVVVGYALTSKKKKSFLQPSFTGLARNRGINFVAIDLNKPLLEQGPFDIILHKLSGEEWCEIIEDYRQKHPEVTVLDPPDAIQHLHNRQSMLQDVVDLNLSDCHGKVGVPRQLVIPKEKDPSSIPYEITKAGMKLPLVAKPLVVDGTAKSHELFLAYDEFSLSELEPPLVLQEFVNHGGLLFKIYIVGETIKVVKRFSLPNISKHEVSKVAGVFRFPRVSCAAASADDADLDPNIAEHPPRPLLERLARELRHRLGLCLFNIDMIREYGTKDVFYVIDINYFPGYGKMPDYEHVFTDFLLSLVQSNCKKKLAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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