SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23780 | AT | Annotation by Michelle Graham. TAIR10: F-box family protein | chr1:8407053-8408480 REVERSE LENGTH=475 | SoyBase | E_val: 3.00E-65 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| PTHR22844 | Panther | F-BOX AND WD40 DOMAIN PROTEIN | JGI | ISS | |
| PTHR22844:SF75 | Panther | F-BOX FAMILY PROTEIN | JGI | ISS | |
| PF00646 | PFAM | F-box domain | JGI | ISS | |
| UniRef100_E5GBH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBH4_CUCME | SoyBase | E_val: 3.00E-96 | ISS |
| UniRef100_UPI000233DEF7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DEF7 related cluster n=1 Tax=unknown RepID=UPI000233DEF7 | SoyBase | E_val: 0 | ISS |
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Glyma20g27261 not represented in the dataset |
Glyma20g27261 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g40160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g135900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g27261.2 sequence type=transcript gene model=Glyma20g27261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTTAGAGACAAAACGTTCCTCACTTTCCCCATCAAGAATCAAGATAGCTAGAGCGACATAGGATCAAAGACGATGAAGCTGAGACTCAGATCTTTGGAATCCAAAGAAACCCTTAAAATCGAAGTCCCTGATTCCTGTTCTCTGCTGCAACTCAAAGACACCGTTTCTCGCACCATCTCTTCTTCTTCCTCTTCTCTGCATCTTTCCCTCAACAGAAAGGACGAAATTCATGCCCCTTCGCCGGAAGAGCCCCTCCACTCTCTCGGCGTCGCCGCCGGCGACCTCATCTTCTACTCTCTCAACCCCATCGCCTTCACCCTCGAAACCCTCCTCCACAAGCCAGAAACTGCTTCACGCGACGGTCCCTCCATCCAGGACTCGCCGGAAACCCTCGCCAGCGACTCCCCCTCCGTTCCCGACGCCGAAAAGCCTCCAACTTTGGACGCCGCGGAACTGGAACCCATGGAAATGATTGATGGGTCTGACGAGATGGTGGTGGTGGGTACCAATTCCGAGCCTTTCTTCGTGAGAAGGGTTCTGAAAGAAGCGCTTGGGAACAACGTTAATGATTTCAAGTTATTAGTGTTTGCGGTTCATGGTGTGGTTCTTGAGTCTGGATTTGTTCGAATCGACAAGGATTGTGGTATGGCGGTTACTGGTTCTCACCTTCTTGATGATTCTCCTCCGGCTTTTTCTTCGGTGATATCTTTGAGGTATGCCCTGCCTGAGATTCTGGCTAATGGTGCTTCTCACAGTGTGAATTTGAAATTTCAGACATTGGGGCATTTTGTGAATGTTTGTGGGTCGTTGTCTGATGATGTTGGGTCGAGGTTGCATTTTGTTTGTTTGGATAAACGTAAATATGTTAGGCCTTTAGAATTGATGCTGGCTAATTCTGAAGCTAAGGGTAGTGTTAATGATGGAGAAGATATTCTCTTTGGAAGTGAAGTTTTTGAAATGTGGAAGATGGTGAAAGATAGGCTTGCATTGCCATTGTTAATTGATCTTTGCGAGAAGGCTGGGTTTGATCTTCCACCTTGTTTCACGCGGCTACCGATGGAGCTTAAGCTTTTGATTTTAGAGCGTCTTCCCGGTGTTGATTTGGCCAAAGTGGCTTGCACCTGTTCGGAGTTGCGATACTTGTCCACCAGCAATGAGTTGTGGAAGAAGAAATATGAGGAAGAGTTTGGAAAAGAAGGAGATAGAAAAGGGTGGCTTTTCAAGGATTTGTTTGCTGTGTCCTGGGAAACGAAGAAGAGGTGGCGAGCGGTTCCTTTTCGACGACGGGGGATTTCAAGGAACATTATTTTCTCACCCAACCATTTTAGAATGCCTCCAGTTTGGGGTGGAGAATATGGTGTGCAGCCAGTCTTTGGTGTGCCATTCCCTAGATACCAACTATGGCGGAATATCATTCCCTCGCGTACTCTGACTCTAGGAGATTTCAATATATAATCTGCTGAGTTGAATTCTACTCATTAGTAATGTGTAGTGCATGGTATGGTTAACCTACTTTATTCTTTCTCCTTTCTCCTTTCTCCTTCCATGTGGAAAATACATTGCTAGAGTGAATGCATCATAAATGATTGGTTATGAATAAATAATGTTTGTGAATATTGATTCATAGGCCTTTTTTTGGGTTAGAATTCAGAATTATTTGGCCATTTTATTTGTTTAGTCTTTGGTTATACATTTTGAATATGATAATAGGAATATGTTATTAGGATACATGATTCAGAATTCTTCAATTTTGTGTGT
>Glyma20g27261.1 sequence type=CDS gene model=Glyma20g27261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGAGACTCAGATCTTTGGAATCCAAAGAAACCCTTAAAATCGAAGTCCCTGATTCCTGTTCTCTGCTGCAACTCAAAGACACCGTTTCTCGCACCATCTCTTCTTCTTCCTCTTCTCTGCATCTTTCCCTCAACAGAAAGGACGAAATTCATGCCCCTTCGCCGGAAGAGCCCCTCCACTCTCTCGGCGTCGCCGCCGGCGACCTCATCTTCTACTCTCTCAACCCCATCGCCTTCACCCTCGAAACCCTCCTCCACAAGCCAGAAACTGCTTCACGCGACGGTCCCTCCATCCAGGACTCGCCGGAAACCCTCGCCAGCGACTCCCCCTCCGTTCCCGACGCCGAAAAGCCTCCAACTTTGGACGCCGCGGAACTGGAACCCATGGAAATGATTGATGGGTCTGACGAGATGGTGGTGGTGGGTACCAATTCCGAGCCTTTCTTCGTGAGAAGGGTTCTGAAAGAAGCGCTTGGGAACAACGTTAATGATTTCAAGTTATTAGTGTTTGCGGTTCATGGTGTGGTTCTTGAGTCTGGATTTGTTCGAATCGACAAGGATTGTGGTATGGCGGTTACTGGTTCTCACCTTCTTGATGATTCTCCTCCGGCTTTTTCTTCGGTGATATCTTTGAGGTATGCCCTGCCTGAGATTCTGGCTAATGGTGCTTCTCACAGTGTGAATTTGAAATTTCAGACATTGGGGCATTTTGTGAATGTTTGTGGGTCGTTGTCTGATGATGTTGGGTCGAGGTTGCATTTTGTTTGTTTGGATAAACGTAAATATGTTAGGCCTTTAGAATTGATGCTGGCTAATTCTGAAGCTAAGGGTAGTGTTAATGATGGAGAAGATATTCTCTTTGGAAGTGAAGTTTTTGAAATGTGGAAGATGGTGAAAGATAGGCTTGCATTGCCATTGTTAATTGATCTTTGCGAGAAGGCTGGGTTTGATCTTCCACCTTGTTTCACGCGGCTACCGATGGAGCTTAAGCTTTTGATTTTAGAGCGTCTTCCCGGTGTTGATTTGGCCAAAGTGGCTTGCACCTGTTCGGAGTTGCGATACTTGTCCACCAGCAATGAGTTGTGGAAGAAGAAATATGAGGAAGAGTTTGGAAAAGAAGGAGATAGAAAAGGGTGGCTTTTCAAGGATTTGTTTGCTGTGTCCTGGGAAACGAAGAAGAGGTGGCGAGCGGTTCCTTTTCGACGACGGGGGATTTCAAGGAACATTATTTTCTCACCCAACCATTTTAGAATGCCTCCAGTTTGGGGTGGAGAATATGGTGTGCAGCCAGTCTTTGGTGTGCCATTCCCTAGATACCAACTATGGCGGAATATCATTCCCTCGCGTACTCTGACTCTAGGAGATTTCAATATATAA >Glyma20g27261.2 sequence type=CDS gene model=Glyma20g27261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGAGACTCAGATCTTTGGAATCCAAAGAAACCCTTAAAATCGAAGTCCCTGATTCCTGTTCTCTGCTGCAACTCAAAGACACCGTTTCTCGCACCATCTCTTCTTCTTCCTCTTCTCTGCATCTTTCCCTCAACAGAAAGGACGAAATTCATGCCCCTTCGCCGGAAGAGCCCCTCCACTCTCTCGGCGTCGCCGCCGGCGACCTCATCTTCTACTCTCTCAACCCCATCGCCTTCACCCTCGAAACCCTCCTCCACAAGCCAGAAACTGCTTCACGCGACGGTCCCTCCATCCAGGACTCGCCGGAAACCCTCGCCAGCGACTCCCCCTCCGTTCCCGACGCCGAAAAGCCTCCAACTTTGGACGCCGCGGAACTGGAACCCATGGAAATGATTGATGGGTCTGACGAGATGGTGGTGGTGGGTACCAATTCCGAGCCTTTCTTCGTGAGAAGGGTTCTGAAAGAAGCGCTTGGGAACAACGTTAATGATTTCAAGTTATTAGTGTTTGCGGTTCATGGTGTGGTTCTTGAGTCTGGATTTGTTCGAATCGACAAGGATTGTGGTATGGCGGTTACTGGTTCTCACCTTCTTGATGATTCTCCTCCGGCTTTTTCTTCGGTGATATCTTTGAGGTATGCCCTGCCTGAGATTCTGGCTAATGGTGCTTCTCACAGTGTGAATTTGAAATTTCAGACATTGGGGCATTTTGTGAATGTTTGTGGGTCGTTGTCTGATGATGTTGGGTCGAGGTTGCATTTTGTTTGTTTGGATAAACGTAAATATGTTAGGCCTTTAGAATTGATGCTGGCTAATTCTGAAGCTAAGGGTAGTGTTAATGATGGAGAAGATATTCTCTTTGGAAGTGAAGTTTTTGAAATGTGGAAGATGGTGAAAGATAGGCTTGCATTGCCATTGTTAATTGATCTTTGCGAGAAGGCTGGGTTTGATCTTCCACCTTGTTTCACGCGGCTACCGATGGAGCTTAAGCTTTTGATTTTAGAGCGTCTTCCCGGTGTTGATTTGGCCAAAGTGGCTTGCACCTGTTCGGAGTTGCGATACTTGTCCACCAGCAATGAGTTGTGGAAGAAGAAATATGAGGAAGAGTTTGGAAAAGAAGGAGATAGAAAAGGGTGGCTTTTCAAGGATTTGTTTGCTGTGTCCTGGGAAACGAAGAAGAGGTGGCGAGCGGTTCCTTTTCGACGACGGGGGATTTCAAGGAACATTATTTTCTCACCCAACCATTTTAGAATGCCTCCAGTTTGGGGTGGAGAATATGGTGTGCAGCCAGTCTTTGGTGTGCCATTCCCTAGATACCAACTATGGCGGAATATCATTCCCTCGCGTACTCTGACTCTAGGAGATTTCAATATATAA
>Glyma20g27261.1 sequence type=predicted peptide gene model=Glyma20g27261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLRLRSLESKETLKIEVPDSCSLLQLKDTVSRTISSSSSSLHLSLNRKDEIHAPSPEEPLHSLGVAAGDLIFYSLNPIAFTLETLLHKPETASRDGPSIQDSPETLASDSPSVPDAEKPPTLDAAELEPMEMIDGSDEMVVVGTNSEPFFVRRVLKEALGNNVNDFKLLVFAVHGVVLESGFVRIDKDCGMAVTGSHLLDDSPPAFSSVISLRYALPEILANGASHSVNLKFQTLGHFVNVCGSLSDDVGSRLHFVCLDKRKYVRPLELMLANSEAKGSVNDGEDILFGSEVFEMWKMVKDRLALPLLIDLCEKAGFDLPPCFTRLPMELKLLILERLPGVDLAKVACTCSELRYLSTSNELWKKKYEEEFGKEGDRKGWLFKDLFAVSWETKKRWRAVPFRRRGISRNIIFSPNHFRMPPVWGGEYGVQPVFGVPFPRYQLWRNIIPSRTLTLGDFNI* >Glyma20g27261.2 sequence type=predicted peptide gene model=Glyma20g27261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLRLRSLESKETLKIEVPDSCSLLQLKDTVSRTISSSSSSLHLSLNRKDEIHAPSPEEPLHSLGVAAGDLIFYSLNPIAFTLETLLHKPETASRDGPSIQDSPETLASDSPSVPDAEKPPTLDAAELEPMEMIDGSDEMVVVGTNSEPFFVRRVLKEALGNNVNDFKLLVFAVHGVVLESGFVRIDKDCGMAVTGSHLLDDSPPAFSSVISLRYALPEILANGASHSVNLKFQTLGHFVNVCGSLSDDVGSRLHFVCLDKRKYVRPLELMLANSEAKGSVNDGEDILFGSEVFEMWKMVKDRLALPLLIDLCEKAGFDLPPCFTRLPMELKLLILERLPGVDLAKVACTCSELRYLSTSNELWKKKYEEEFGKEGDRKGWLFKDLFAVSWETKKRWRAVPFRRRGISRNIIFSPNHFRMPPVWGGEYGVQPVFGVPFPRYQLWRNIIPSRTLTLGDFNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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