SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19590 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:6805798-6808374 FORWARD LENGTH=340 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0007094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle spindle assembly checkpoint | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0000776 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: kinetochore | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1036 | KOG | Mitotic spindle checkpoint protein BUB3, WD repeat superfamily | JGI | ISS | |
| PTHR10971 | Panther | MITOTIC CHECKPOINT PROTEIN AND POLY(A)+ RNA EXPORT PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9SND5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitotic checkpoint protein bub3, putative n=1 Tax=Ricinus communis RepID=B9SND5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_C6TK27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TK27_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g26960 not represented in the dataset |
Glyma20g26960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g133400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g26960.1 sequence type=CDS gene model=Glyma20g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACGGCGGTGCTCACGACGGGGCGAGAGTTGTCGAACCCTCCATCCGACGGCATCACCAATCTTCGATTCTCCAACCACAGCGATCATCTTTTGGTGTCCTCATGGGACAAGAGCGTGCGCTTGTATGATGCGAGTGCCAATGTGTTGAGAGGAGAGTTTATGCACGCTGGCCCCGTCCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGCCGCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCTAATAAAGAGGATATTCTGGGAAGGCATGATGCACCCGTTCGTTGCATTGAGTATTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTAAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAAGAGCGCACACTTGTTGGGACATATCCACAACCTGAGCGTGTCTACTCTCTCTCACTGGTTGGACATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGAAACATGTCTCAACCGGAACAAAGAAGAGAATCCTCACTGAAATACCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGCTATGGAATTCTTCGACCTCTCAGAGGCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCACAGAAAATCAGAGGCTGGAAGGGACATAGTCTATCCTGTGAATGCAATTGCTTTCCACCCCATATATGGAACATTTGCCACAGGAGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTCTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGGCCTAAAGCAGGAACTAAAGCCGACGAACAAGATGCTATCTACGTACGCAGTGTAAACGAGATTGAGGTCAAGCCGAAGCCCAAAGTATATCCCAATCCTCCAGCTTGA
>Glyma20g26960.1 sequence type=predicted peptide gene model=Glyma20g26960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATAVLTTGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCIEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKAGTKADEQDAIYVRSVNEIEVKPKPKVYPNPPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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