Glyma20g26840 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g26840

Feature Type:	gene_model
Chromosome:	Gm20
Start:	36171233
stop:	36174187
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g26840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43740	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr3:15644127-15645446 FORWARD LENGTH=218	SoyBase	E_val: 2.00E-97	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF836	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C6ZS01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat family protein n=1 Tax=Glycine max RepID=C6ZS01_SOYBN	SoyBase	E_val: 5.00E-150	ISS
UniRef100_C6ZS01	UniRef	Annotation by Michelle Graham. Best UniRef hit: Leucine-rich repeat family protein n=1 Tax=Glycine max RepID=C6ZS01_SOYBN	SoyBase	E_val: 5.00E-150	ISS

Expression Patterns of Glyma20g26840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g26840

Paralog	Evidence	Comments
Glyma10g40490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g26840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g132400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g26840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g26840

Limit To All Plant Sequences

>Glyma20g26840.1   sequence type=CDS   gene model=Glyma20g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTTCATTTCACTCTCTTTGTTGCTTCTCTTTCTCAATTACCCCTTCCTTTCCCTCTCAACCAACCCTGAAGGGAACGCTCTGCATGCTTTGAGAAGCAGGATTTCTGATCCCAACAATGTGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTCCATGTTACTTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCGGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGTTAACAGGGAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGGAAGATTCCAAAGTCATTTGGAAAGTTGAAGTCACTTAAATTCCTGCGGCTGAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTTACTCGTCTCACTAATCTCAAAATCTTTGATGTTTCCAATAATGATCTCTGTGGAACAATACCAGTTGAAGGCAACTTTGAATCTTTTCCAATGGAAAGTTTTGAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA

Predicted protein sequences of Glyma20g26840

Limit To All Plant Sequences

>Glyma20g26840.1   sequence type=predicted peptide   gene model=Glyma20g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFISLSLLLLFLNYPFLSLSTNPEGNALHALRSRISDPNNVLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNELTGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTNLKIFDVSNNDLCGTIPVEGNFESFPMESFENNRFSGPELKGLVPYDFGC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain