Glyma20g26770 - SoyBase

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Report for Sequence Feature Glyma20g26770

Feature Type:	gene_model
Chromosome:	Gm20
Start:	36117691
stop:	36120676
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g26770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33920	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr4:16260876-16262703 FORWARD LENGTH=380	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0700	KOG	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF97	Panther	PROTEIN PHOSPHATASE-2C	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9SNB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SNB4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NG07	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NG07_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g26770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g26770

Paralog	Evidence	Comments
Glyma10g40550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g26770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g131500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g26770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g26770

Limit To All Plant Sequences

>Glyma20g26770.1   sequence type=CDS   gene model=Glyma20g26770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCGTTTGTGCTACGGCCCTCTGGATTGCTGCTTCGGACGCCGTGGTGGCCGCGCCGCCGACGGACTTCTCTGGCACACCGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCCCAGGCGAATTACAGTCTTGAGGATCAGAGCCAAGTCTTCACCTCCCCCTCCGCCACCTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCCAGATTCGTCAACAAGCGTCTCTTCCCTTATTTGCACAAATTCGCCACTGAGCAAGGGGGTTTGTCAGTGGATGTGATTAAAAAGGCGTTCAGTGCCACAGAGGAGGAATTCTTGCATTTGGTGAAGCTATCCATGCCCATTAGTCCCCAGATTGCTTCCGTCGGATCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTATGTTGCAAACCTTGGAGACTCGAGAGCTGTTCTTGGCAGGAGGGATACAGAGAGAAAGAACAGTCCGGTGGTGGCACAGCGTTTGTCAACTGATCATAATGTAGCTGATGAGGAGGTGAGAAAAGAAGTTGAAGCTCTCCATCCCGATGACTCACACATTGTGGTTTATAGCCGTGGAGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCTATTGGTGATGTGTATTTGAAGAAACCAGATTTCTACCGTGACCTGGGTTTTCAGCAGTTTGGAAATCCTATTCCTTTGAAGCGTTCTGTAATGACAGCTGAACCATCAATCATTATTAGGGAGCTTGAGTCAGAGGATTTATTCTTGATATTTGCATCAGATGGCCTCTGGGAACAATTAAGTGATGAGGCTGCGGTTCAGATCGTTTTCAAACATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCTGCTCTTCATGAAGCTGCAAAGAAGAGAGAGATGAGATACGATGACATAAAGAAAATTGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTGGTTGTAATCTATCTTGATCACCATGCAGGCTCCTCTAAGCAAACTGCTGTTGGCTATACAACTGCCCCAGTTGATATTTTTTCCCTAAATGCGGATGGGATGCTTGGTACAGTTGCCTAA

Predicted protein sequences of Glyma20g26770

Limit To All Plant Sequences

>Glyma20g26770.1   sequence type=predicted peptide   gene model=Glyma20g26770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRLCYGPLDCCFGRRGGRAADGLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSMPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDTERKNSPVVAQRLSTDHNVADEEVRKEVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPDFYRDLGFQQFGNPIPLKRSVMTAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVQIVFKHPRAGIAKRLVRAALHEAAKKREMRYDDIKKIDKGIRRHFHDDITVVVIYLDHHAGSSKQTAVGYTTAPVDIFSLNADGMLGTVA*

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