SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19420 | AT | Annotation by Michelle Graham. TAIR10: PTEN 2 | chr3:6731824-6735354 FORWARD LENGTH=611 | SoyBase | E_val: 0 | ISS |
| GO:0035335 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-tyrosine dephosphorylation | SoyBase | N/A | ISS |
| GO:0043407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity | SoyBase | N/A | ISS |
| GO:0046856 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol dephosphorylation | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0052866 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phosphate phosphatase activity | SoyBase | N/A | ISS |
| GO:0070300 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidic acid binding | SoyBase | N/A | ISS |
| KOG2283 | KOG | Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases | JGI | ISS | |
| PTHR12305 | Panther | PHOSPHATASE WITH HOMOLOGY TO TENSIN | JGI | ISS | |
| PTHR12305:SF8 | Panther | PTEN-RELATED, ARATH | JGI | ISS | |
| PF10409 | PFAM | C2 domain of PTEN tumour-suppressor protein | JGI | ISS | |
| UniRef100_B9RYC0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoprotein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RYC0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NFV6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFV6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g26280 not represented in the dataset |
Glyma20g26280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g41000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g126600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g26280.3 sequence type=transcript gene model=Glyma20g26280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATACATAACAAAACACAGGATAACCCCTCGGTTGGCCTCAACCGTGCGATCATTAATCTATGGCATCGCACTGATCATCATTCATTCGTGTATGTCAATCGGTATCAGCATTCAGCATCGCCTTCCTAAATTCAACGACTCCGTTCCGTTCCCTTTCTTCTTCCTCGAAACCCTAATCAGCTTCTGCACTTCCTGCTGATTCCACTTTTGTTGGAAATTGAAAATCACGAGGTTCAATTGATGGAAATCAGTATCCGGAAATGCTTTTAAGCAAGATGTTTAGTCAGGGACGTCACAGAATCGTTGAGAAGTGTTCTTCAACCGGGAAGATACTGTAGGGCCTGGGCCACCTAATGATAAGATATCCAATTTCTACCTAAGTTTCCATTGATACTTTTTTAATCAAAATGGATTCAGTGCCTGCTGATGTGTCTAATTCACATCCTATCAATGAACCGTCGAATTCTCCTCCGGCTGAAGAGACCGACAGACAAGCTTCTGCTTCTGTAGCCTCCAGGCAAGATAATTCTCCACATGAGGCATCACCTAGGCTATCTCCCACGGGCATATCGTCCTGGGCCAAAAACTTGAAAATTTCTCAGCCATTTTCTGGCAACCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTTCACGCATCACAAGTAATTTCGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGCAGATGACAGTTCCAATGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTCGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCACAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGCGACATGAGCTCTGGGTTTTTCGGCTATGTTGAGGGATTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGGTTGATGATTTCTAGTCTTCTAGTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCGGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCTCAGATGCCCTTACTGGATTAGGCCCTCTATAACCGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCTGAGAACCAGGGAGCTTTTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCGGGAGAGCCTGGCCTTACCGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTATTGAACACCAGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCTCCGGGATTTATGGTTGAGGTTGTGCTGGTGGATTATAATGGCAATGATGTAACTTCTAAAACTGAAACTACTACAAAGAAATCAGATGAGAGTTCAAGTAACAATCCTGCCAGTTCCGCCCCAGTGGAAAGGAGCACCACCCCTGCACAGAATGCAGACAAAGAATCAGATAGTCATGATAAAGATGACGTGTTTTCAGATGGCGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTACAAATGACACCAGAATCTCCGAATCAAACAGAGTTTCAAATGAAATTGCAAATTTATCACATGCAACAGAGCAAGTTTCCTTGGGAAACAAGAGCTCTACGCCAATTCGTCATGCTAGTGAGCCAGGAAGTAATGTTGATGGAAAAACAGTGTCCAGTCTCGAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCTGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGAACTACAACAAGAAGGGTTACTTTGTTATCTTAATACTTCAAATTTGTACATAAAATTGCTTGCAAGTTCCTACACAACAATATTTTGGTCATCCATTTGTTTGTTTGTTGTAATTATAAATTTGGCTATTTCATTGGCTTAATGCACAAGTTAAAAATAAGAATATGAAAATGTATTGGTCTACCCTACCCCCAAAGTACCACAGTCTGCATACATAGTCCATTTTAATTTAAAGTTGGCATAAACGTATATCTCAT
>Glyma20g26280.2 sequence type=CDS gene model=Glyma20g26280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCAGTGCCTGCTGATGTGTCTAATTCACATCCTATCAATGAACCGTCGAATTCTCCTCCGGCTGAAGAGACCGACAGACAAGCTTCTGCTTCTGTAGCCTCCAGGCAAGATAATTCTCCACATGAGGCATCACCTAGGCTATCTCCCACGGGCATATCGTCCTGGGCCAAAAACTTGAAAATTTCTCAGCCATTTTCTGGCAACCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTTCACGCATCACAAGTAATTTCGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGCAGATGACAGTTCCAATGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTCGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCACAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGCGACATGAGCTCTGGGTTTTTCGGCTATGTTGAGGGATTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGGTTGATGATTTCTAGTCTTCTAGTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCGGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCTCAGATGCCCTTACTGGATTAGGCCCTCTATAACCGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCTGAGAACCAGGGAGCTTTTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCGGGAGAGCCTGGCCTTACCGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTATTGAACACCAGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCTCCGGGATTTATGGTTGAGGTTGTGCTGGTGGATTATAATGGCAATGATGTAACTTCTAAAACTGAAACTACTACAAAGAAATCAGATGAGAGTTCAAGTAACAATCCTGCCAGTTCCGCCCCAGTGGAAAGGAGCACCACCCCTGCACAGAATGCAGACAAAGAATCAGATAGTCATGATAAAGATGACGTGTTTTCAGATGGCGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTACAAATGACACCAGAATCTCCGAATCAAACAGAGTTTCAAATGAAATTGCAAATTTATCACATGCAACAGAGCAAGTTTCCTTGGGAAACAAGAGCTCTACGCCAATTCGTCATGCTAGTGAGCCAGGAAGTAATGTTGATGGAAAAACAGTGTCCAGTCTCGAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCTGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA >Glyma20g26280.3 sequence type=CDS gene model=Glyma20g26280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCAGTGCCTGCTGATGTGTCTAATTCACATCCTATCAATGAACCGTCGAATTCTCCTCCGGCTGAAGAGACCGACAGACAAGCTTCTGCTTCTGTAGCCTCCAGGCAAGATAATTCTCCACATGAGGCATCACCTAGGCTATCTCCCACGGGCATATCGTCCTGGGCCAAAAACTTGAAAATTTCTCAGCCATTTTCTGGCAACCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTTCACGCATCACAAGTAATTTCGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGCAGATGACAGTTCCAATGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTCGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCACAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGCGACATGAGCTCTGGGTTTTTCGGCTATGTTGAGGGATTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGGTTGATGATTTCTAGTCTTCTAGTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCGGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCTCAGATGCCCTTACTGGATTAGGCCCTCTATAACCGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCTGAGAACCAGGGAGCTTTTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCGGGAGAGCCTGGCCTTACCGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTATTGAACACCAGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCTCCGGGATTTATGGTTGAGGTTGTGCTGGTGGATTATAATGGCAATGATGTAACTTCTAAAACTGAAACTACTACAAAGAAATCAGATGAGAGTTCAAGTAACAATCCTGCCAGTTCCGCCCCAGTGGAAAGGAGCACCACCCCTGCACAGAATGCAGACAAAGAATCAGATAGTCATGATAAAGATGACGTGTTTTCAGATGGCGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTACAAATGACACCAGAATCTCCGAATCAAACAGAGTTTCAAATGAAATTGCAAATTTATCACATGCAACAGAGCAAGTTTCCTTGGGAAACAAGAGCTCTACGCCAATTCGTCATGCTAGTGAGCCAGGAAGTAATGTTGATGGAAAAACAGTGTCCAGTCTCGAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCTGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA
>Glyma20g26280.2 sequence type=predicted peptide gene model=Glyma20g26280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSVPADVSNSHPINEPSNSPPAEETDRQASASVASRQDNSPHEASPRLSPTGISSWAKNLKISQPFSGNQDDSSSGNVGKSTFSRITSNFGLRLSPKSPVADDSSNETAGQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLVFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLLRCPYWIRPSITVSDHSGVLFSTKKHLRTRELLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFMVEVVLVDYNGNDVTSKTETTTKKSDESSSNNPASSAPVERSTTPAQNADKESDSHDKDDVFSDGEAEQSASSRSKQTKAPSEAVETVTNDTRISESNRVSNEIANLSHATEQVSLGNKSSTPIRHASEPGSNVDGKTVSSLEVPSAESEFKAMAADASVFTFGDDEDYESD* >Glyma20g26280.3 sequence type=predicted peptide gene model=Glyma20g26280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSVPADVSNSHPINEPSNSPPAEETDRQASASVASRQDNSPHEASPRLSPTGISSWAKNLKISQPFSGNQDDSSSGNVGKSTFSRITSNFGLRLSPKSPVADDSSNETAGQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLVFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLLRCPYWIRPSITVSDHSGVLFSTKKHLRTRELLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFMVEVVLVDYNGNDVTSKTETTTKKSDESSSNNPASSAPVERSTTPAQNADKESDSHDKDDVFSDGEAEQSASSRSKQTKAPSEAVETVTNDTRISESNRVSNEIANLSHATEQVSLGNKSSTPIRHASEPGSNVDGKTVSSLEVPSAESEFKAMAADASVFTFGDDEDYESD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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