Glyma20g26050 - SoyBase

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Report for Sequence Feature Glyma20g26050

Feature Type:	gene_model
Chromosome:	Gm20
Start:	35610231
stop:	35616609
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g26050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15020	AT	Annotation by Michelle Graham. TAIR10: quiescin-sulfhydryl oxidase 1 \| chr1:5173341-5176105 REVERSE LENGTH=528	SoyBase	E_val: 0	ISS
GO:0043157	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cation stress	SoyBase	N/A	ISS
GO:0043268	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of potassium ion transport	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016972	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiol oxidase activity	SoyBase	N/A	ISS
KOG1731	KOG	FAD-dependent sulfhydryl oxidase/quiescin and related proteins	JGI		ISS
PTHR22897	Panther	QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE	JGI		ISS
PTHR22897:SF3	Panther	QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
PF04777	PFAM	Erv1 / Alr family	JGI		ISS
UniRef100_E5RKG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein disulfide family n=1 Tax=Glycine max RepID=E5RKG8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NFT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFT7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g26050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g26050

Paralog	Evidence	Comments
Glyma10g41220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g26050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g124700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g26050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g26050

Limit To All Plant Sequences

>Glyma20g26050.2   sequence type=transcript   gene model=Glyma20g26050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAACATAGGCGACAGAGGAAAGAGGGAGTGATTCAAGGTTTGGTGTCGAGAGATGTGTTTCCGCCATCTCCGATCCGAAGCAAAGCTTATGCAAACGTAATTCTCACCCTTTTCTGGTTCACCTTTCCCTTCCCAACAACACCCATCAAATCCAATCTCATATGCACACACAGCTACTTGCAGTTTCAACTAAACCCCTCTATCTCTCCCAATAAACTAAAGAAAAAAAGAAAACTGTAAGTAACAGATCCATTTCTCTCTCCACCTCACTTTCAAAAATCTCGCTTCTCTTCAATTTTCGGCCAATATCCTTCAAAACCCTAATCCTCTATCCCCTTTGATCCGCCCCGTTTTCCATTTCTGGGATGATGTATTTACATTTGGGTCTCTTTCTGTGCATTCTTTCTGTGTGCTGCTCTGCGACTTTGTCGTCTTCTTCCTTCGCGTCGCGCCGTTCGATCCTTCGAGAGGTTAGCGACAATGGCAAAAGTGGTGGAGATCATCCCGATTATGCCGTTGAGCTGAACGCCACGAATTTCGATGCCGTTCTTAAAGAGACCCCTGCTACTTTCGCCGTCGTTGAATTCTTTGCCCATTGGTGCCCTGCGTGCAGGAATTATAAGCCTCACTACGAAAAGGTTGCTAGATTGTTTAATGGGCCTGATGCAGTGCATCCAGGAATCATATTAATGACAAGGGTAGATTGTGCATCAAAGATAAATACTAAGCTATGTGATAAGTTTTCTGTTGGTCATTATCCTATGCTTTTTTGGGGCCCTCCTTCAAAATTTGTTGGTGCTGGTTGGGAACCTAAACAAGAGAAAAGTGATATACGTGTGATTGATGATGCACGCACAGCTGATCGGTTGCTTAATTGGATCAACAAGCAATTAGGCAGTTCATTTGGCCTGGATGATCAGAAATTTCAAAATGAGCTTCTTTCATCCAATGTATCAGACCCCGGACAGATTGCAAGAGCTATCTATGATGTCGAAGAGGCAACTTCTACAGCTTTTGACATTATCCTAGAGCACAAGATGATAAAACCAGGAACTCGTACTTCACTTATAAAGTTTCTTCAGCTTTTAGCAGCCCATCATCCTTCTAGGAGATGCCGGAAGGGTACTGCTGAATTTCTTGTGAGCTTTGATGACTTGTACCCAACAGATTTTTGGTCAACTAATAAGCAGGAAGATGACAAGAGTTCAGTTAGGAACCTAAAGATTTGTGGAAAAGATGTGCCTCGAGGATACTGGATGTTTTGTCGTGGCAGTAAGAATGAAACCAGAGGCTTTAGTTGTGGTTTATGGGTTCTTCTGCATTCACTCTCTGTGAGGATTGATGATGGAGAGAGTCAGTTTACATTTAATGCAATATGTGATTTTGTTCACAACTTCTTCATCTGTGAGGAATGCCGACAACATTTCTACAAGATGTGTTCAAGCGTTTCTAGTCCTTTCAACAAAGCCCGTGACTTTGCTCTCTGGTTGTGGAGTTCCCATAACAAGGTAAACGAAAGATTGATGAAAGAAGAAGCATCCCTAGGCACTGCTGACCCCAAATTCCCAAAGACAATTTGGCCACCGAAGCAGCTTTGCTCTTCCTGTTACCTAAGTGTTGACCAGAGGAACAACAAAATTGAATGGAACCAAGATGAGGTCTTTAAGTTCTTGGCTGATTACTACAGTAAAACACTAGCGTCTCTGTACAAGGACAAGAGTATTGTCGGAAATGACGGAAGTGAAGGAGCTGTTGAAGATTTAATAGTAGCAACTAATGCAATTGTGGTGCCTGTGGGAGCTGCTTTGGCTATTGCTGTTGCTAGCTGTGCTTTTGGAGCACTTGCTTGCTACTGGCGTTCGCAGCAAAAGAGTCGGAAGCCTAGAAGAACGTGGAAGTAGGAATTGGAGACAAGTACACTTCAAGGCATGAGGTGCATAGCAGCTTTCATAGGCAACCAATTATTATGGTCTCACTCCAAAGAGCCTTGCCAAAGTTCCTTTTTGAATCTATCCTGAATAGAAAAATGTACAGAATACAATTCTTGATTTGGAGACCATTACTGATCTGTGCTATTTTCTTTCACTTTTTTGGCGTTGAGTTCGCATCTACTATACAGCCTAGGAATTTGGGGGAAAGGAGGACATGGCATGTAACATTTTTGTTTTGTAATTTGGGATTATTTTTTCAATATCAAAGTAACTGTATAAGCTAAAAGATTTTTATTTGATGGGTCTCAATGGTTCGGTTGAGTTTTCTAAAAGATTCCTGCGGATTAATTTAATTAAATTTTATTAGTTCCATC

Coding sequences of Glyma20g26050

Limit To All Plant Sequences

>Glyma20g26050.1   sequence type=CDS   gene model=Glyma20g26050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTATTTACATTTGGGTCTCTTTCTGTGCATTCTTTCTGTGTGCTGCTCTGCGACTTTGTCGTCTTCTTCCTTCGCGTCGCGCCGTTCGATCCTTCGAGAGGTTAGCGACAATGGCAAAAGTGGTGGAGATCATCCCGATTATGCCGTTGAGCTGAACGCCACGAATTTCGATGCCGTTCTTAAAGAGACCCCTGCTACTTTCGCCGTCGTTGAATTCTTTGCCCATTGGTGCCCTGCGTGCAGGAATTATAAGCCTCACTACGAAAAGGTTGCTAGATTGTTTAATGGGCCTGATGCAGTGCATCCAGGAATCATATTAATGACAAGGGTAGATTGTGCATCAAAGATAAATACTAAGCTATGTGATAAGTTTTCTGTTGGTCATTATCCTATGCTTTTTTGGGGCCCTCCTTCAAAATTTGTTGGTGCTGGTTGGGAACCTAAACAAGAGAAAAGTGATATACGTGTGATTGATGATGCACGCACAGCTGATCGGTTGCTTAATTGGATCAACAAGCAATTAGGCAGTTCATTTGGCCTGGATGATCAGAAATTTCAAAATGAGCTTCTTTCATCCAATGTATCAGACCCCGGACAGATTGCAAGAGCTATCTATGATGTCGAAGAGGCAACTTCTACAGCTTTTGACATTATCCTAGAGCACAAGATGATAAAACCAGGAACTCGTACTTCACTTATAAAGTTTCTTCAGCTTTTAGCAGCCCATCATCCTTCTAGGAGATGCCGGAAGGGTACTGCTGAATTTCTTGTGAGCTTTGATGACTTGTACCCAACAGATTTTTGGTCAACTAATAAGCAGGAAGATGACAAGAGTTCAGTTAGGAACCTAAAGATTTGTGGAAAAGATGTGCCTCGAGGATACTGGATGTTTTGTCGTGGCAGTAAGAATGAAACCAGAGGCTTTAGTTGTGGTTTATGGGTTCTTCTGCATTCACTCTCTGTGAGGATTGATGATGGAGAGAGTCAGTTTACATTTAATGCAATATGTGATTTTGTTCACAACTTCTTCATCTGTGAGGAATGCCGACAACATTTCTACAAGATGTGTTCAAGCGTTTCTAGTCCTTTCAACAAAGCCCGTGACTTTGCTCTCTGGTTGTGGAGTTCCCATAACAAGGTAAACGAAAGATTGATGAAAGAAGAAGCATCCCTAGGCACTGCTGACCCCAAATTCCCAAAGACAATTTGGCCACCGAAGCAGCTTTGCTCTTCCTGTTACCTAAGTGTTGACCAGAGGAACAACAAAATTGAATGGAACCAAGATGAGGTCTTTAAGTTCTTGGCTGATTACTACAGTAAAACACTAGCGTCTCTGTACAAGGACAAGAGTATTGTCGGAAATGACGGAAGTGAAGGAGCTGTTGAAGATTTAATAGTAGCAACTAATGCAATTGTGGTGCCTGTGGGAGCTGCTTTGGCTATTGCTGTTGCTAGCTGTGCTTTTGGAGCACTTGCTTGCTACTGGCGTTCGCAGCAAAAGAGTCGGAAGTATTTTCACCACCTACACTCTCTAAAGAACATTTGA

>Glyma20g26050.2   sequence type=CDS   gene model=Glyma20g26050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTATTTACATTTGGGTCTCTTTCTGTGCATTCTTTCTGTGTGCTGCTCTGCGACTTTGTCGTCTTCTTCCTTCGCGTCGCGCCGTTCGATCCTTCGAGAGGTTAGCGACAATGGCAAAAGTGGTGGAGATCATCCCGATTATGCCGTTGAGCTGAACGCCACGAATTTCGATGCCGTTCTTAAAGAGACCCCTGCTACTTTCGCCGTCGTTGAATTCTTTGCCCATTGGTGCCCTGCGTGCAGGAATTATAAGCCTCACTACGAAAAGGTTGCTAGATTGTTTAATGGGCCTGATGCAGTGCATCCAGGAATCATATTAATGACAAGGGTAGATTGTGCATCAAAGATAAATACTAAGCTATGTGATAAGTTTTCTGTTGGTCATTATCCTATGCTTTTTTGGGGCCCTCCTTCAAAATTTGTTGGTGCTGGTTGGGAACCTAAACAAGAGAAAAGTGATATACGTGTGATTGATGATGCACGCACAGCTGATCGGTTGCTTAATTGGATCAACAAGCAATTAGGCAGTTCATTTGGCCTGGATGATCAGAAATTTCAAAATGAGCTTCTTTCATCCAATGTATCAGACCCCGGACAGATTGCAAGAGCTATCTATGATGTCGAAGAGGCAACTTCTACAGCTTTTGACATTATCCTAGAGCACAAGATGATAAAACCAGGAACTCGTACTTCACTTATAAAGTTTCTTCAGCTTTTAGCAGCCCATCATCCTTCTAGGAGATGCCGGAAGGGTACTGCTGAATTTCTTGTGAGCTTTGATGACTTGTACCCAACAGATTTTTGGTCAACTAATAAGCAGGAAGATGACAAGAGTTCAGTTAGGAACCTAAAGATTTGTGGAAAAGATGTGCCTCGAGGATACTGGATGTTTTGTCGTGGCAGTAAGAATGAAACCAGAGGCTTTAGTTGTGGTTTATGGGTTCTTCTGCATTCACTCTCTGTGAGGATTGATGATGGAGAGAGTCAGTTTACATTTAATGCAATATGTGATTTTGTTCACAACTTCTTCATCTGTGAGGAATGCCGACAACATTTCTACAAGATGTGTTCAAGCGTTTCTAGTCCTTTCAACAAAGCCCGTGACTTTGCTCTCTGGTTGTGGAGTTCCCATAACAAGGTAAACGAAAGATTGATGAAAGAAGAAGCATCCCTAGGCACTGCTGACCCCAAATTCCCAAAGACAATTTGGCCACCGAAGCAGCTTTGCTCTTCCTGTTACCTAAGTGTTGACCAGAGGAACAACAAAATTGAATGGAACCAAGATGAGGTCTTTAAGTTCTTGGCTGATTACTACAGTAAAACACTAGCGTCTCTGTACAAGGACAAGAGTATTGTCGGAAATGACGGAAGTGAAGGAGCTGTTGAAGATTTAATAGTAGCAACTAATGCAATTGTGGTGCCTGTGGGAGCTGCTTTGGCTATTGCTGTTGCTAGCTGTGCTTTTGGAGCACTTGCTTGCTACTGGCGTTCGCAGCAAAAGAGTCGGAAGCCTAGAAGAACGTGGAAGTAG

Predicted protein sequences of Glyma20g26050

Limit To All Plant Sequences

>Glyma20g26050.1   sequence type=predicted peptide   gene model=Glyma20g26050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMYLHLGLFLCILSVCCSATLSSSSFASRRSILREVSDNGKSGGDHPDYAVELNATNFDAVLKETPATFAVVEFFAHWCPACRNYKPHYEKVARLFNGPDAVHPGIILMTRVDCASKINTKLCDKFSVGHYPMLFWGPPSKFVGAGWEPKQEKSDIRVIDDARTADRLLNWINKQLGSSFGLDDQKFQNELLSSNVSDPGQIARAIYDVEEATSTAFDIILEHKMIKPGTRTSLIKFLQLLAAHHPSRRCRKGTAEFLVSFDDLYPTDFWSTNKQEDDKSSVRNLKICGKDVPRGYWMFCRGSKNETRGFSCGLWVLLHSLSVRIDDGESQFTFNAICDFVHNFFICEECRQHFYKMCSSVSSPFNKARDFALWLWSSHNKVNERLMKEEASLGTADPKFPKTIWPPKQLCSSCYLSVDQRNNKIEWNQDEVFKFLADYYSKTLASLYKDKSIVGNDGSEGAVEDLIVATNAIVVPVGAALAIAVASCAFGALACYWRSQQKSRKYFHHLHSLKNI*

>Glyma20g26050.2   sequence type=predicted peptide   gene model=Glyma20g26050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMYLHLGLFLCILSVCCSATLSSSSFASRRSILREVSDNGKSGGDHPDYAVELNATNFDAVLKETPATFAVVEFFAHWCPACRNYKPHYEKVARLFNGPDAVHPGIILMTRVDCASKINTKLCDKFSVGHYPMLFWGPPSKFVGAGWEPKQEKSDIRVIDDARTADRLLNWINKQLGSSFGLDDQKFQNELLSSNVSDPGQIARAIYDVEEATSTAFDIILEHKMIKPGTRTSLIKFLQLLAAHHPSRRCRKGTAEFLVSFDDLYPTDFWSTNKQEDDKSSVRNLKICGKDVPRGYWMFCRGSKNETRGFSCGLWVLLHSLSVRIDDGESQFTFNAICDFVHNFFICEECRQHFYKMCSSVSSPFNKARDFALWLWSSHNKVNERLMKEEASLGTADPKFPKTIWPPKQLCSSCYLSVDQRNNKIEWNQDEVFKFLADYYSKTLASLYKDKSIVGNDGSEGAVEDLIVATNAIVVPVGAALAIAVASCAFGALACYWRSQQKSRKPRRTWK*

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