SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15140 | AT | Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase | chr1:5210403-5212137 REVERSE LENGTH=295 | SoyBase | E_val: 3.00E-139 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0534 | KOG | NADH-cytochrome b-5 reductase | JGI | ISS | |
| PTHR19370 | Panther | NADH-CYTOCHROME B5 REDUCTASE | JGI | ISS | |
| PTHR19370:SF9 | Panther | OS01G0120600 PROTEIN (FRAGMENT) | JGI | ISS | |
| PF00175 | PFAM | Oxidoreductase NAD-binding domain | JGI | ISS | |
| PF00970 | PFAM | Oxidoreductase FAD-binding domain | JGI | ISS | |
| UniRef100_G7IAV6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fruit protein pKIWI502 n=1 Tax=Medicago truncatula RepID=G7IAV6_MEDTR | SoyBase | E_val: 2.00E-153 | ISS |
| UniRef100_I1NFS6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFS6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma20g25940 not represented in the dataset |
Glyma20g25940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g41310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g123700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g25940.2 sequence type=transcript gene model=Glyma20g25940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCCGCGTCCCCTTCTCACTCTGACCGAACCCTCCACGTAATACCTCACCAAACAAAACCACATTAAAAAAAAAAAACATTTCTCTCGTGTTCTCCCCGCCACCCTCTCTCACCCTCCACCCCCATGCGCACTTTAGCCCCTCCATGTCCATCCTACGCCGCCTCCACCTAAACCTTTGCACCACCACCCGCCGCCGCCGCCTTGCCACCGCTTCCGCCGCACTACGCCAGGACACCACCGTCTGGACCCCGGCCCCTCTCTCCAAGGTCGAGCACGCCGCCGAGTCCCTCTTCCACATCGCCATCGACGTCTCCGACGCGCCCGATCACGCCGCGTCCCACACACTCGCCGGGCAGTACCTCCAGCTCCGCCTCCCCGACGCGCTCAAGCCCTCGTTTCTGGCCATCGCGTCGCCGCCGAAGCTCGCCGCGGCGCGTGGAGTGTTCGAGTTTCTGGTAAAGAGCGTGGCGGGGTCCACCGCGGAAGCGCTGTGCGCGTTGAAGAGAGGGGATGTGGTTGAACTCAGCCAAGTCATGGGAAACGGATTCAACATCGATCGGATCCACCCTCCGAAGAATTTTGGAACCGTTCTCGTCTTCGCCACTGGATCTGGAATTAGTCCAATTCGGTCGCTTATTGAGTCAGGATTTGATGCTGCGAAGAGGTCTGATGTGAGACTATATTATGGGGCCAGGAACCTTCAGAGAATGGCTTATCAGGTTTAAAGATTGGGAATCTTCCGGTGTGAAGATTGTGCCTGTATTGTCTCAACCAGATGAGAGTTGGACTGGGGAAAGTGGCTATGTTCAGGCTGCATTTTCAAGAGAGAAGCAAATATCTGACCCACTGGCAACTGGTGCTGTACTTTGTGGACAGAAACAGATGACCGAGGAAGTGACATCAATTCTTGTTGCTGCTGGAGTATCCGCTGATAAGATATTGAAGAACTTCTGACCAAAATGGACTTTTGGGCACTGTTGTATCATTTTTTGAATTTAAAATACTCCATAATTATTTCATTGCCTTTGCTGAGGATCAAGCATCTCAGCGTAGAATGTACAATAAAAAACAATTTTGGAATTTTAGTCTATATATAAGAATTTCCGGGGTCCAAATAGAGGACGGGAATACCAGGCTTAAGAAAGTTGAAAAATACTTTTGCTAGGGTTGGTTTGTTTCACTCTTGCAAGCCAATATTTTGTTCTAGTTCTATCAATGCCCGTATTATCACGCAGCCATCATCGATATATTGACATTAAGATTGACACTGAGCCAAGAGTCGACGTGTAATTCGGCTGTTTTTAATTAAGCTCGACTCGCATAGCTT
>Glyma20g25940.1 sequence type=CDS gene model=Glyma20g25940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATCCTACGCCGCCTCCACCTAAACCTTTGCACCACCACCCGCCGCCGCCGCCTTGCCACCGCTTCCGCCGCACTACGCCAGGACACCACCGTCTGGACCCCGGCCCCTCTCTCCAAGGTCGAGCACGCCGCCGAGTCCCTCTTCCACATCGCCATCGACGTCTCCGACGCGCCCGATCACGCCGCGTCCCACACACTCGCCGGGCAGTACCTCCAGCTCCGCCTCCCCGACGCGCTCAAGCCCTCGTTTCTGGCCATCGCGTCGCCGCCGAAGCTCGCCGCGGCGCGTGGAGTGTTCGAGTTTCTGGTAAAGAGCGTGGCGGGGTCCACCGCGGAAGCGCTGTGCGCGTTGAAGAGAGGGGATGTGGTTGAACTCAGCCAAGTCATGGGAAACGGATTCAACATCGATCGGATCCACCCTCCGAAGAATTTTGGAACCGTTCTCGTCTTCGCCACTGGATCTGGAATTAGTCCAATTCGGTCGCTTATTGAGTCAGGATTTGATGCTGCGAAGAGGTCTGATGTGAGACTATATTATGGGGCCAGGAACCTTCAGAGAATGGCTTATCAGGATAGGTTTAAAGATTGGGAATCTTCCGGTGTGAAGATTGTGCCTGTATTGTCTCAACCAGATGAGAGTTGGACTGGGGAAAGTGGCTATGTTCAGGCTGCATTTTCAAGAGAGAAGCAAATATCTGACCCACTGGCAACTGGTGCTGTACTTTGTGGACAGAAACAGATGACCGAGGAAGTGACATCAATTCTTGTTGCTGCTGGAGTATCCGCTGATAAGATATTGAAGAACTTCTGA >Glyma20g25940.2 sequence type=CDS gene model=Glyma20g25940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATCCTACGCCGCCTCCACCTAAACCTTTGCACCACCACCCGCCGCCGCCGCCTTGCCACCGCTTCCGCCGCACTACGCCAGGACACCACCGTCTGGACCCCGGCCCCTCTCTCCAAGGTCGAGCACGCCGCCGAGTCCCTCTTCCACATCGCCATCGACGTCTCCGACGCGCCCGATCACGCCGCGTCCCACACACTCGCCGGGCAGTACCTCCAGCTCCGCCTCCCCGACGCGCTCAAGCCCTCGTTTCTGGCCATCGCGTCGCCGCCGAAGCTCGCCGCGGCGCGTGGAGTGTTCGAGTTTCTGGTAAAGAGCGTGGCGGGGTCCACCGCGGAAGCGCTGTGCGCGTTGAAGAGAGGGGATGTGGTTGAACTCAGCCAAGTCATGGGAAACGGATTCAACATCGATCGGATCCACCCTCCGAAGAATTTTGGAACCGTTCTCGTCTTCGCCACTGGATCTGGAATTAGTCCAATTCGGTCGCTTATTGAGTCAGGATTTGATGCTGCGAAGAGGTCTGATGTGAGACTATATTATGGGGCCAGGAACCTTCAGAGAATGGCTTATCAGGTTTAA
>Glyma20g25940.1 sequence type=predicted peptide gene model=Glyma20g25940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSILRRLHLNLCTTTRRRRLATASAALRQDTTVWTPAPLSKVEHAAESLFHIAIDVSDAPDHAASHTLAGQYLQLRLPDALKPSFLAIASPPKLAAARGVFEFLVKSVAGSTAEALCALKRGDVVELSQVMGNGFNIDRIHPPKNFGTVLVFATGSGISPIRSLIESGFDAAKRSDVRLYYGARNLQRMAYQDRFKDWESSGVKIVPVLSQPDESWTGESGYVQAAFSREKQISDPLATGAVLCGQKQMTEEVTSILVAAGVSADKILKNF* >Glyma20g25940.2 sequence type=predicted peptide gene model=Glyma20g25940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSILRRLHLNLCTTTRRRRLATASAALRQDTTVWTPAPLSKVEHAAESLFHIAIDVSDAPDHAASHTLAGQYLQLRLPDALKPSFLAIASPPKLAAARGVFEFLVKSVAGSTAEALCALKRGDVVELSQVMGNGFNIDRIHPPKNFGTVLVFATGSGISPIRSLIESGFDAAKRSDVRLYYGARNLQRMAYQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
