SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22970 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits to 132 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:8130840-8132199 REVERSE LENGTH=357 | SoyBase | E_val: 8.00E-120 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| UniRef100_I1NFS0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NFS0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5BPZ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q5BPZ6_ARATH | SoyBase | E_val: 6.00E-82 | ISS |
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Glyma20g25870 not represented in the dataset |
Glyma20g25870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g41392 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g123200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g25870.2 sequence type=transcript gene model=Glyma20g25870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATATTCAAATTCGATCCTTTATAAAAATAAACTTAAACCCCTATGTCAGTGGCCAATCCCAATTCCCAGGGTCTAAGCAGCACAACACTAGTTCCCAACGCCGTCACCCCCGTTTGTGCAGTGAAGAAGAAGAAGATGGCCGTAAAATCGAAGAAAGAGAAAGAACACCTGAATCTTCTCCTAGGTTCCCACCTTACTACTATCCATGAAACCCTCCAGGTTTTGGATCAAACACCGCCATCTTCTTCTTCCGCCAAAGTCACCTGGGACGATGTCATTAAGATGGCTGAACAAGTCTCAAAACAAGCTACCACGGGTCCACCTTTTCTATTTCGATTGCCCTTTCTCTATTTTCTCTTCTATCACTCCCAAACTTCATTCTTTTTATTTGTTTTGTGTTGTCATCAATTCAATTTATTCATAAATGAATGAAATCATTTAGACTGCCAAAGGAGAAACATTTCTATTCGTTTTTTTCTTGCCTTTTTTGTATTGTGAAATGCACTATTAGGATATTCCGTGGGATTTTTTTTTTCACTTATGTAGGCATGAATGCATGGATTTTTTTATGTAATTAAATGTGTCTTCTTTCTTTTCTGCAGTGGGAATGCTGTGGACTGGAGAGAAGCCAGATGCCAAAGCAGTTGAGGAAAATATGGCATCATATTTCAACACCCTGCAAGGTTTCCTTTTACTTTCCCATGGCAGTACAGTAGGTGCAGGGCCTACCTTGTCTTCTGCTGTTCATGCATCCGTCAAGCAAGTCGTTGATTCCAGCTTCAGATTGATGAAGGAAACTGTCTCTTTATACGGGTACCATTCTAAAGACCTGAAAATATCAGTACCACAATTGGTTGGTGCTGTCTGGGAAGCCTGTTCTGCCCTTAAAAAGACTCCTTCCACAAATATTACAGCAATTGGGAGAGGAATGACACAGGTTGCTGTTTCAGTGAAGGACGTTCTTCGTGAGATGAAAGAATTGAAACCTGTTTCATGTGATGATCAAGTTGACGAAGCTGCTGGTGAGAGTTGTGCAGAAGCAGCGTCTGAGCCACATGATGATAATTCAAGTGAAGGTGATCTAGGGAATGACCTGTCACCTGAAGAGATGAAAGTGGCTGAAAGAGCAATTGAGGTTGTCTCTAATACGCTTTCATTTATAAAAATACTTATTCACTCCATCATAGGCTTGCTTAAGCTGGAAAAACCAAATGACAACAGCAGTTTTGTAAATTCTCTGGAGAAGTTGTTGCAGCTGTGTCATGAACTTGGTCGACAGATCGATGAGATTGGAGCTTGCCTTTATCCCCCACAAGAGATTCCTGCCATAAATGCAGCTTTGGAGAAAATTCACAGCATTATTGATGCTGTGCAAGTGGAGGTAGGAGAACTTCTAGGCGCATCAGATGTATTTCTGGAGCCATGCAATGATTTGAGGAGTTCACTGAGACAGCTTGCATCTGAACTAAGTAACTCTAGTACTGCTGATATAGAAGCCAGGGTTGAAAATATAACATTAAACCAATAAGTAGACTCCAATATGTGTACTTAATTATTATTTTTTTTGCAGGGGGGTTGGCCGGTTGGGAATATGTGAAATGAATTTGACATTGTAGAACTTACGAAAATGATCCTTTTTTATTTATAATTTTATATACACCTGTATCCAGTGTACTTTATGTTACTGGTCAACTGCTTGTTTGAATACAAGGAGTCTAACTTAATTGGTTGAACAAAGTGCGTGAGTTGCTG
>Glyma20g25870.1 sequence type=CDS gene model=Glyma20g25870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGTGGCCAATCCCAATTCCCAGGGTCTAAGCAGCACAACACTAGTTCCCAACGCCGTCACCCCCGTTTGTGCAGTGAAGAAGAAGAAGATGGCCGTAAAATCGAAGAAAGAGAAAGAACACCTGAATCTTCTCCTAGGTTCCCACCTTACTACTATCCATGAAACCCTCCAGGTTTTGGATCAAACACCGCCATCTTCTTCTTCCGCCAAAGTCACCTGGGACGATGTCATTAAGATGGCTGAACAAGTCTCAAAACAAGCTACCACGGTGGGAATGCTGTGGACTGGAGAGAAGCCAGATGCCAAAGCAGTTGAGGAAAATATGGCATCATATTTCAACACCCTGCAAGGTTTCCTTTTACTTTCCCATGGCAGTACAGTAGGTGCAGGGCCTACCTTGTCTTCTGCTGTTCATGCATCCGTCAAGCAAGTCGTTGATTCCAGCTTCAGATTGATGAAGGAAACTGTCTCTTTATACGGGTACCATTCTAAAGACCTGAAAATATCAGTACCACAATTGGTTGGTGCTGTCTGGGAAGCCTGTTCTGCCCTTAAAAAGACTCCTTCCACAAATATTACAGCAATTGGGAGAGGAATGACACAGGTTGCTGTTTCAGTGAAGGACGTTCTTCGTGAGATGAAAGAATTGAAACCTGTTTCATGTGATGATCAAGTTGACGAAGCTGCTGGTGAGAGTTGTGCAGAAGCAGCGTCTGAGCCACATGATGATAATTCAAGTGAAGGTGATCTAGGGAATGACCTGTCACCTGAAGAGATGAAAGTGGCTGAAAGAGCAATTGAGGTTGTCTCTAATACGCTTTCATTTATAAAAATACTTATTCACTCCATCATAGGCTTGCTTAAGCTGGAAAAACCAAATGACAACAGCAGTTTTGTAAATTCTCTGGAGAAGTTGTTGCAGCTGTGTCATGAACTTGGTCGACAGATCGATGAGATTGGAGCTTGCCTTTATCCCCCACAAGAGATTCCTGCCATAAATGCAGCTTTGGAGAAAATTCACAGCATTATTGATGCTGTGCAAGTGGAGGTAGGAGAACTTCTAGGCGCATCAGATGTATTTCTGGAGCCATGCAATGATTTGAGGAGTTCACTGAGACAGCTTGCATCTGAACTAAGTAACTCTAGTACTGCTGATATAGAAGCCAGGGTTGAAAATATAACATTAAACCAATAA >Glyma20g25870.2 sequence type=CDS gene model=Glyma20g25870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTGGACTGGAGAGAAGCCAGATGCCAAAGCAGTTGAGGAAAATATGGCATCATATTTCAACACCCTGCAAGGTTTCCTTTTACTTTCCCATGGCAGTACAGTAGGTGCAGGGCCTACCTTGTCTTCTGCTGTTCATGCATCCGTCAAGCAAGTCGTTGATTCCAGCTTCAGATTGATGAAGGAAACTGTCTCTTTATACGGGTACCATTCTAAAGACCTGAAAATATCAGTACCACAATTGGTTGGTGCTGTCTGGGAAGCCTGTTCTGCCCTTAAAAAGACTCCTTCCACAAATATTACAGCAATTGGGAGAGGAATGACACAGGTTGCTGTTTCAGTGAAGGACGTTCTTCGTGAGATGAAAGAATTGAAACCTGTTTCATGTGATGATCAAGTTGACGAAGCTGCTGGTGAGAGTTGTGCAGAAGCAGCGTCTGAGCCACATGATGATAATTCAAGTGAAGGTGATCTAGGGAATGACCTGTCACCTGAAGAGATGAAAGTGGCTGAAAGAGCAATTGAGGTTGTCTCTAATACGCTTTCATTTATAAAAATACTTATTCACTCCATCATAGGCTTGCTTAAGCTGGAAAAACCAAATGACAACAGCAGTTTTGTAAATTCTCTGGAGAAGTTGTTGCAGCTGTGTCATGAACTTGGTCGACAGATCGATGAGATTGGAGCTTGCCTTTATCCCCCACAAGAGATTCCTGCCATAAATGCAGCTTTGGAGAAAATTCACAGCATTATTGATGCTGTGCAAGTGGAGGTAGGAGAACTTCTAGGCGCATCAGATGTATTTCTGGAGCCATGCAATGATTTGAGGAGTTCACTGAGACAGCTTGCATCTGAACTAAGTAACTCTAGTACTGCTGATATAGAAGCCAGGGTTGAAAATATAACATTAAACCAATAA
>Glyma20g25870.1 sequence type=predicted peptide gene model=Glyma20g25870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVANPNSQGLSSTTLVPNAVTPVCAVKKKKMAVKSKKEKEHLNLLLGSHLTTIHETLQVLDQTPPSSSSAKVTWDDVIKMAEQVSKQATTVGMLWTGEKPDAKAVEENMASYFNTLQGFLLLSHGSTVGAGPTLSSAVHASVKQVVDSSFRLMKETVSLYGYHSKDLKISVPQLVGAVWEACSALKKTPSTNITAIGRGMTQVAVSVKDVLREMKELKPVSCDDQVDEAAGESCAEAASEPHDDNSSEGDLGNDLSPEEMKVAERAIEVVSNTLSFIKILIHSIIGLLKLEKPNDNSSFVNSLEKLLQLCHELGRQIDEIGACLYPPQEIPAINAALEKIHSIIDAVQVEVGELLGASDVFLEPCNDLRSSLRQLASELSNSSTADIEARVENITLNQ* >Glyma20g25870.2 sequence type=predicted peptide gene model=Glyma20g25870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLWTGEKPDAKAVEENMASYFNTLQGFLLLSHGSTVGAGPTLSSAVHASVKQVVDSSFRLMKETVSLYGYHSKDLKISVPQLVGAVWEACSALKKTPSTNITAIGRGMTQVAVSVKDVLREMKELKPVSCDDQVDEAAGESCAEAASEPHDDNSSEGDLGNDLSPEEMKVAERAIEVVSNTLSFIKILIHSIIGLLKLEKPNDNSSFVNSLEKLLQLCHELGRQIDEIGACLYPPQEIPAINAALEKIHSIIDAVQVEVGELLGASDVFLEPCNDLRSSLRQLASELSNSSTADIEARVENITLNQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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