SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01180 | AT | Annotation by Michelle Graham. TAIR10: phosphatidic acid phosphatase 1 | chr2:107182-108555 REVERSE LENGTH=327 | SoyBase | E_val: 2.00E-151 | ISS |
| GO:0006644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid metabolic process | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005887 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008195 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidate phosphatase activity | SoyBase | N/A | ISS |
| KOG3030 | KOG | Lipid phosphate phosphatase and related enzymes of the PAP2 family | JGI | ISS | |
| PTHR10165 | Panther | LIPID PHOSPHATE PHOSPHATASE-RELATED | JGI | ISS | |
| PTHR10165:SF45 | Panther | PHOSPHATIDATE PHOSPHATASE | JGI | ISS | |
| PF01569 | PFAM | PAP2 superfamily | JGI | ISS | |
| UniRef100_B9SQ05 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidic acid phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SQ05_RICCO | SoyBase | E_val: 1.00E-154 | ISS |
| UniRef100_C6TDH4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDH4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g25640 not represented in the dataset |
Glyma20g25640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g41590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g121200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g25640.2 sequence type=transcript gene model=Glyma20g25640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTTTAGAGAAAAGGAATAGGAGTTGGTTAACGGATCTAGAATTTGTTGAAGCAGGAACCGCTCCATCTCGCCCCGCGCCAAACCATTTGATTTCAAAGCGGAGAGTTGAGTTGATTCTGTTTTCTTCTCCACAATCACAACAGTTTTATTATCGTATAATTATTTCTGATAAAATCTTGAACATCTTTTTCTCTCATTCTAAGAATTGGAGACTTTTCAAAAGTTTAGGGACTGCAAATTCTCTGCTTCTCTACACATGGAGCCGGTGTCGCGTGCTAATTTCTTTTCATTCCAAAGATTTTGGCTACCGTTTCAGGGACAGGGAGGGATGAGGCAGCAAGTTGATCCCTCGGCTCACACAATCAAGTCCCATGGAGCATCACTTGCAAGAAAACACGCTCGTGATTGGCTTATATTGCTGCTTCTCATAGTGATAGAGATTGTCCTTTTTGTCATTCATCCATTTAAACGCTTTGTGGGAAGGGACATGATGGAGGACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCTTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAGGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCCGGCCTCGCCCAGACTTCTATTGGCGTTGCTTCCCCGATGGGGTAGAGAATTATGATAGTTGGGGAGGTGTGGTATGTCATGGCAATGCTAGCGATATAAAAGAAGGACACAAGAGTTTCCCAAGCGGCCATACATCATGGTCCTTTGCAGGTCTAGGTTTTCTGTCTCTGTACCTATCGGGGAAGATTAAAGCTTTTGATCGCAAAGGGCACGTGGCAAAATTATGCATTGTGTTTCTTCCTCTACTTGTTGCTTGCCTAGTTGCAATCTCTCGAGTGGATGACTATTGGCACCATTGGCAAGATGTGTTTGCCGGAGGCATTCTAGGGCTTGTTGTGGCAACCTTTTGTTATATGCAGTTCTTCCCTGCGCCCTATAATGATGAAGGATGGGGTCCATATGCATATTTCCGGGCAATGGAGGAATCACGAGCGAATGCAAATATTAATCGGGAATTACCAGTTGGGCAGGCCATGGAGGATCGGGTAACGAATCAAGAACCAAGGAGAAATGGTGATACCACCTTTACCCCTTACTCTTACCGTAGCCCAACCTTGGAAGCCATGGAAATGGGACAGAAGTAATAGTCTTCTATAGCACTAATCTTCTCCCTAGCTACCTAGTTCCTTACTTTTGTGTATACTTATGAGCTTCTCTACACGGCAACCACTAGATTTAGCTAATTGTGCAGCTTCTGTTTCTTCTTGCATTATTATTATTATTGGCACTGCCACTGTAAAAAATGAAAAATGACGGCTTCTTTCCGCTGAATTAGATTATGTTGATAGATGGTACGTTAATGGGATCCCATTTTGACCTTATAATGGGGATTGCCTACTCCTGTCTGGCTAGCATTCCTTTAATTATAAAAAAATAAGTATTAAATTAGTTTTTTTTT
>Glyma20g25640.1 sequence type=CDS gene model=Glyma20g25640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCGGTGTCGCGTGCTAATTTCTTTTCATTCCAAAGATTTTGGCTACCGTTTCAGGGACAGGGAGGGATGAGGCAGCAAGTTGATCCCTCGGCTCACACAATCAAGTCCCATGGAGCATCACTTGCAAGAAAACACGCTCGTGATTGGCTTATATTGCTGCTTCTCATAGTGATAGAGATTGTCCTTTTTGTCATTCATCCATTTAAACGCTTTGTGGGAAGGGACATGATGGAGGACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCTTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAGGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCCGGCCTCGCCCAGACTTCTATTGGCGTTGCTTCCCCGATGGGGTAGAGAATTATGATAGTTGGGGAGGTGTGGTATGTCATGGCAATGCTAGCGATATAAAAGAAGGACACAAGAGTTTCCCAAGCGGCCATACATCATGGTCCTTTGCAGGTCTAGGTTTTCTGTCTCTGTACCTATCGGGGAAGATTAAAGCTTTTGATCGCAAAGGGCACGTGGCAAAATTATGCATTGTGTTTCTTCCTCTACTTGTTGCTTGCCTAGTTGCAATCTCTCGAGTGGATGACTATTGGCACCATTGGCAAGATGTGTTTGCCGGAGGCATTCTAGGGCTTGTTGTGGCAACCTTTTGTTATATGCAGTTCTTCCCTGCGCCCTATAATGATGAAGGATGGGGTCCATATGCATATTTCCGGGCAATGGAGGAATCACGAGCGAATGCAAATATTAATCGGGAATTACCAGTTGGGCAGGCCATGGAGGATCGGGTAACGAATCAAGAACCAAGGAGAAATGGTGATACCACCTTTACCCCTTACTCTTACCGTAGCCCAACCTTGGAAGCCATGGAAATGGGACAGAAGTAA >Glyma20g25640.2 sequence type=CDS gene model=Glyma20g25640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCGGTGTCGCGTGCTAATTTCTTTTCATTCCAAAGATTTTGGCTACCGTTTCAGGGACAGGGAGGGATGAGGCAGCAAGTTGATCCCTCGGCTCACACAATCAAGTCCCATGGAGCATCACTTGCAAGAAAACACGCTCGTGATTGGCTTATATTGCTGCTTCTCATAGTGATAGAGATTGTCCTTTTTGTCATTCATCCATTTAAACGCTTTGTGGGAAGGGACATGATGGAGGACCTTAGATATCCTATGAAAGAAAACACGGTGCCTGTATGGGCTGTTCCTTTATATGCGGTTCTGTTGCCAATGGCCGTTTTCCTTCTCTTCTATATGCGCAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAGGTTTGTTATTTGCTGTTCTGATAACTGGGGTCTTCACCGATGCAATAAAAAATGCAGTTGGCCGGCCTCGCCCAGACTTCTATTGGCGTTGCTTCCCCGATGGGGTAGAGAATTATGATAGTTGGGGAGGTGTGGTATGTCATGGCAATGCTAGCGATATAAAAGAAGGACACAAGAGTTTCCCAAGCGGCCATACATCATGGTCCTTTGCAGGTCTAGGTTTTCTGTCTCTGTACCTATCGGGGAAGATTAAAGCTTTTGATCGCAAAGGGCACGTGGCAAAATTATGCATTGTGTTTCTTCCTCTACTTGTTGCTTGCCTAGTTGCAATCTCTCGAGTGGATGACTATTGGCACCATTGGCAAGATGTGTTTGCCGGAGGCATTCTAGGGCTTGTTGTGGCAACCTTTTGTTATATGCAGTTCTTCCCTGCGCCCTATAATGATGAAGGATGGGGTCCATATGCATATTTCCGGGCAATGGAGGAATCACGAGCGAATGCAAATATTAATCGGGAATTACCAGTTGGGCAGGCCATGGAGGATCGGGTAACGAATCAAGAACCAAGGAGAAATGGTGATACCACCTTTACCCCTTACTCTTACCGTAGCCCAACCTTGGAAGCCATGGAAATGGGACAGAAGTAA
>Glyma20g25640.1 sequence type=predicted peptide gene model=Glyma20g25640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPVSRANFFSFQRFWLPFQGQGGMRQQVDPSAHTIKSHGASLARKHARDWLILLLLIVIEIVLFVIHPFKRFVGRDMMEDLRYPMKENTVPVWAVPLYAVLLPMAVFLLFYMRRRDVYDLHHSVLGLLFAVLITGVFTDAIKNAVGRPRPDFYWRCFPDGVENYDSWGGVVCHGNASDIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDRKGHVAKLCIVFLPLLVACLVAISRVDDYWHHWQDVFAGGILGLVVATFCYMQFFPAPYNDEGWGPYAYFRAMEESRANANINRELPVGQAMEDRVTNQEPRRNGDTTFTPYSYRSPTLEAMEMGQK* >Glyma20g25640.2 sequence type=predicted peptide gene model=Glyma20g25640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPVSRANFFSFQRFWLPFQGQGGMRQQVDPSAHTIKSHGASLARKHARDWLILLLLIVIEIVLFVIHPFKRFVGRDMMEDLRYPMKENTVPVWAVPLYAVLLPMAVFLLFYMRRRDVYDLHHSVLGLLFAVLITGVFTDAIKNAVGRPRPDFYWRCFPDGVENYDSWGGVVCHGNASDIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDRKGHVAKLCIVFLPLLVACLVAISRVDDYWHHWQDVFAGGILGLVVATFCYMQFFPAPYNDEGWGPYAYFRAMEESRANANINRELPVGQAMEDRVTNQEPRRNGDTTFTPYSYRSPTLEAMEMGQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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