SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49540 | AT | Annotation by Michelle Graham. TAIR10: elongator protein 2 | chr1:18333767-18337382 REVERSE LENGTH=838 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1063 | KOG | RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily | JGI | ISS | |
| PTHR13729 | Panther | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION INTERACTING PROTEIN 1 | JGI | ISS | |
| PTHR13729:SF2 | Panther | gb def: wd-repeat protein [encephalitozoon cuniculi] | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9SJW7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJW7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NFP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g25600 not represented in the dataset |
Glyma20g25600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g41620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g121000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g25600.1 sequence type=CDS gene model=Glyma20g25600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGAAGTCGAAGTGAAAAGGGTGTTTATTGGAGCGGGATGCAACAGAATAGTGAACAACGTTTCATGGGGTGCTTCTGGTTTGCTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGAGTGCTCAAATTTTGACTACTCTCCCGGGTCACAAGGCAGTTGTGAATTGCACTCACTGGCTCCCATCTAGCAGGTTTCTATTTAAAGCAAAACAATTGGAGCAGCACTATTTGCTATCTGGAGATGCAGATGGTGCTATTATTTTGTGGGAACTGTCCCTTGCTGATGGGAAGTGGAGGCAAGTGTTACAGCTGCCACAATCACACAAGAAAGGTGTTACATGCATTAGTGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGCACTGCTTGTGTATGGGAACTTGCATTTCCAATGACAGGAAGCGGTGACTGTAAATTATCGTGCCTGGATTCTTTCTCTGTTGGTTCTAAATCTATGGTAACCCTATCGTTAGCTGAATTGCCTGGAGATAGTGGGCAAATTGTCCTTGCAATGGGAGGATTAGATAACAAGATTCACCTCTATTGTGGTGGAAGGTCAGGAAAGTTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATCAATGGGGAAGTAAACAATATTTTTCTGGTTAGTTCATCTCAGGATAAAGGCATACGAATTTGGAAGATGGCATTACGTAGCTCTATGTCCAATGGACACGGCATAGACAGGAAAGGAGAAATAAGCTTATCATCCTATATAGAAGGTCCCGTGCTTGTGGCTGGTTCATCTTCTTTTCAGGTATCCTTAGAATCTCTTTTAATTGGACATGAGGATTGGGTATATTCAGTAATGTGGCAACCCCCTTTGGTTGCACCCATGGAAGAGGATGCCTATTATCAACCCCAAAGTATCTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCTGGTGTCTGGATGAATGTGGTCACTGTTGGGGAACTAAGCCACTGTGCTCTGGGGTTCTATGGTGGCCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCTTTCCATCTTTGGAAAAATGTTGGTAATGATAATTGGCTGCCACAAAAGGTCCCCTCTGGTCATTTTGCATCAGTGACTGATATTGCATGGGCTAGATCTGGTGATTATATCATGTCCGTCAGTCATGACCAGACAACTAGAATTTATGCTCCGTGGAAAGTTGAGGCTTCTCTCCAAGATGGAGAATTTTGGCATGAAATAGCTCGCCCTCAAGTTCATGGACATGATATAAATTGTATGGCAGTTATTCATAGTAAGGGGAATCATCGTTTTCTCTGTGGAGCTGAAGAAAAAGTTGCCAGAGTGTTTGAAGCCCCGTTATCATTTTTGAAGACATTAAATAATGCCACTTTGCAGAAGTCCTGTTCTTCCGATGATATCATGGGAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGCTCAAGCTGTGCATGAGGCCCCTAAAAGAAGTGGGATCGATGGTCTTGACACCATTGAAACTATTCCTGATGCAGTTCCAACTGTGTTCACTGAACCACCTATTGAAGATCAACTGGCTTGGCATACACTTTGGCCTGAATCACACAAACTCTATGGTCATGGAAACGAACTATTTTCTTTATGTTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGGCTCAATCTGCAGCAGTTGCAGAGGTATGGCTTTGGCAGGTGGGTTCATGGAAAGCAGTCGGCCGCCTGCAATCCCACAGCTTAACAGTGACACAGATGGAGTTCTCACATGATGACAACTTTCTTTTGACTGTCTCGAGGGATCGCCAGTTCTCTGTTTTTTCAATCACAAGAACAGGCACCGGTGAAATCAGTTATAGTCTTCTTGTGAGACAGGAGGGGCACAAACGGATTATCTGGTCATGTTCTTGGAATCCACATGGTCACGAATTTGCGACAGGTTCAAGGGATAAGACAGTGAAAATCTGGGCCATAGAGAGGGAGTCTGTCAAGCAGCTTATGTCTTTACCTCAATTTACGAGTAGTGTAACAGCATTATCTTGGGTTGGTCTCCATCATCGGAAGAATAATGGACTTCTAGCTGTTGGAATGGAAAATGGCCAAATAGAGTTGTGGAATCTGTCTTATAACAGAGCAGATGATGGGAGCATAGCAGCACCAGGTTTGGCTGCTTCTCTTGCTGTACGTATAGATCCTTTTATATGCCATGCGTCTACCGTAAACCGTCTAGCATGGAAGAAAAATGAGGATGATCAAACGAGTATGCAACTTGCTTCATGTGGAGCTGATAATTGTGTAAGAGTGTTTGATGTATCTGTTGAGTAA
>Glyma20g25600.1 sequence type=predicted peptide gene model=Glyma20g25600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MREVEVKRVFIGAGCNRIVNNVSWGASGLLSFGAHNAVAIFCPKSAQILTTLPGHKAVVNCTHWLPSSRFLFKAKQLEQHYLLSGDADGAIILWELSLADGKWRQVLQLPQSHKKGVTCISGIMVSQTEAMFASTSSDGTACVWELAFPMTGSGDCKLSCLDSFSVGSKSMVTLSLAELPGDSGQIVLAMGGLDNKIHLYCGGRSGKFVHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKGIRIWKMALRSSMSNGHGIDRKGEISLSSYIEGPVLVAGSSSFQVSLESLLIGHEDWVYSVMWQPPLVAPMEEDAYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGNDNWLPQKVPSGHFASVTDIAWARSGDYIMSVSHDQTTRIYAPWKVEASLQDGEFWHEIARPQVHGHDINCMAVIHSKGNHRFLCGAEEKVARVFEAPLSFLKTLNNATLQKSCSSDDIMGDVQILGANMSALGLSQKPIYAQAVHEAPKRSGIDGLDTIETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSAAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFSITRTGTGEISYSLLVRQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAIERESVKQLMSLPQFTSSVTALSWVGLHHRKNNGLLAVGMENGQIELWNLSYNRADDGSIAAPGLAASLAVRIDPFICHASTVNRLAWKKNEDDQTSMQLASCGADNCVRVFDVSVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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