SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25920 | AT | Annotation by Michelle Graham. TAIR10: ribosomal protein L15 | chr3:9491268-9492558 REVERSE LENGTH=277 | SoyBase | E_val: 1.00E-111 | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0000311 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG0846 | KOG | Mitochondrial/chloroplast ribosomal protein L15/L10 | JGI | ISS | |
| PTHR12934 | Panther | 50S RIBOSOMAL PROTEIN L15 | JGI | ISS | |
| PTHR12934:SF2 | Panther | 50S RIBOSOMAL PROTEIN L15 | JGI | ISS | |
| PF00828 | PFAM | Ribosomal protein L18e/L15 | JGI | ISS | |
| UniRef100_C6SYC0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYC0_SOYBN | SoyBase | E_val: 2.00E-180 | ISS |
| UniRef100_P31165 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L15, chloroplastic (Fragment) n=1 Tax=Pisum sativum RepID=RK15_PEA | SoyBase | E_val: 8.00E-130 | ISS |
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Glyma20g24990 not represented in the dataset |
Glyma20g24990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g116100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24990.2 sequence type=transcript gene model=Glyma20g24990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTAATAATAATAGAAAAGGCGAGAAAGTGAAAAACTTATCCTATCCGTTATTTGAAGTTCTGTTGGTGAGTGTGAGTGAGTGTATCAATCGGCCACACAGAAATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCCAAATATGTCCATGTAAATCTGAGAGACATAGAAGATGCTAAATTTAAGGAAGGGGAAGAAGTGTCTCTAGAGTCACTGAAGGCGAAAGGTGTGATTAATCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGAGGTATTGTGGTGTTTAACTTTCAACAATAAATGAGGATGCTACTTTCCTAGCAGTAGCACAATCTACCAAAAAGGACTATTCCTCAGACTCAGAGGCCCCTGGTTGCTGTGAATGAAGTTACTTTCTGTAAATTCTTTGATGTTCTTTTATCCTATTTTGGTGTTCAAGTTTATCTGCACTTTTTGGCATGTGTGATAAGCATGTAAGATCAAACATATAATATTTAGGTGGATGTATCGGTGGTTTGAAGCTGTAAATTTGGAATACCTTTCTCATTTGATTTATGAACACCAAAAAATATGTATACTTACATATTTTAGCATTTAATTTTCTCAATTTAAAGACTGTGTGAATTGTCAATCATCTATTTCTTTTATCCATCAGGGATAAATTGGTTTTTTGGTCAGAGGTCTTATTTTTTAGAGTGTCAGTAGTCCACTTTAAAACATACTGCCCTGTGATGATTTTTCAAGCAATGACTATTTTGAAGTCTATAGTTCAGGAAGCAAATATTCAAAGACATTGATTTATTTCCTTTTTCAATATCTTTATGGTGTTCCTTTGTTTTTCATATGATAAAAGCTGATGGCCTTTTCCGTATCTTTATTCTAGAGGCCAAATGATAGACTTGTTTTTCTGTTGAAAATCATCTGTGGGAGAAGAAATGAGATGAAATAGCATTCCCGTCTCAATTCAGTAGAGTCTTTAAATGATCATTTCCTAC
>Glyma20g24990.1 sequence type=CDS gene model=Glyma20g24990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCCAAATATGTCCATGTAAATCTGAGAGACATAGAAGATGCTAAATTTAAGGAAGGGGAAGAAGTGTCTCTAGAGTCACTGAAGGCGAAAGGTGTGATTAATCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGATCTTGGGTGAAGGAGAACTGAGCAAGAAGTTGACATTAAAAGCCCGCGCCTTTTCCACATCAGCAAAGGAGAAACTTGAGAATGCTGGTTGTTCCCTCACCGTGCTTCCTGGCCGCAAGAAATGGGTTAAGCCATCAGTTGCTAAAAACCTTGCCCGCGCTGATGAATACTTTGCCAAGAAGCGCGCCATGGCTGCTTCCGAGCCAGCCTCAGCTTGA >Glyma20g24990.2 sequence type=CDS gene model=Glyma20g24990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAGTGCTTCTCTGATTCCAGTTTCCTGGTTGCCTTGGCGGCCACTTTCTCCTTTCAAGGGAACGGTGAAAACCTTGGTCGCAAAACCATGGCTGAAGAAGATTCAGCAAGCAAGACCCCTCATTTCCGTGGTTAACAAGGCTGCCTCTCTATCTTCCCCCGTGACAGCACCCAGCGTCGGCGTTCGGTTTCGGCTGGACAATTTGGGGCCGCAACCGGGTTCGAGGAAGAGGGCTAAGAGAAAGGGTAGAGGAATATCCGCAGGGCAAGGGGCAAGTTGTGGTTTTGGGATGAGAGGTCAGAAATCTCGATCTGGACCTGGCGTTAGGAAGGGTTTCGAAGGTGGCCAGATGCCGCTTTATCGCCGAATCCCCAAACTCAGAGGAATTGCAGGAGGTATGCATGCGGGATTGCCCAAATATGTCCATGTAAATCTGAGAGACATAGAAGATGCTAAATTTAAGGAAGGGGAAGAAGTGTCTCTAGAGTCACTGAAGGCGAAAGGTGTGATTAATCCATCAGGAAGAGAAAGGAGACTTCCTTTGAAGAGGTATTGTGGTGTTTAA
>Glyma20g24990.1 sequence type=predicted peptide gene model=Glyma20g24990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSASLIPVSWLPWRPLSPFKGTVKTLVAKPWLKKIQQARPLISVVNKAASLSSPVTAPSVGVRFRLDNLGPQPGSRKRAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVHVNLRDIEDAKFKEGEEVSLESLKAKGVINPSGRERRLPLKILGEGELSKKLTLKARAFSTSAKEKLENAGCSLTVLPGRKKWVKPSVAKNLARADEYFAKKRAMAASEPASA* >Glyma20g24990.2 sequence type=predicted peptide gene model=Glyma20g24990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSASLIPVSWLPWRPLSPFKGTVKTLVAKPWLKKIQQARPLISVVNKAASLSSPVTAPSVGVRFRLDNLGPQPGSRKRAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVHVNLRDIEDAKFKEGEEVSLESLKAKGVINPSGRERRLPLKRYCGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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