SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68490 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183 | SoyBase | E_val: 7.00E-41 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_D7M813 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g16110 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M813_ARALL | SoyBase | E_val: 4.00E-31 | ISS |
| UniRef100_UPI00018C6F0C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6F0C related cluster n=1 Tax=unknown RepID=UPI00018C6F0C | SoyBase | E_val: 4.00E-120 | ISS |
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Glyma20g24980 not represented in the dataset |
Glyma20g24980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42045 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g116000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24980.1 sequence type=CDS gene model=Glyma20g24980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAGTTTGCCGTCCAAAACGTCGTCGTTCCATCCCACGATGAGATTAGCGTTGTTTGCCCCAAGCCCCGCCGCCTCGGCCTCTTCAACTTCCCCGTCAACGATCCCACTGTTAGACCCTTCCGCTGGCATCTCAGTTACCATGTTGAGCCATGTGATTCAAACTCATCTGGTTCAAATCCTCTGGACAACTTACTCACCAAGGATGGTGATTTTGATGTAGAGCAATCGTGGCCAGTGGTAGCCCCGTCGCCCCTATTTTTCAGCGGGTCGCCGCCGAGCAGAGCAGCTAACCCTTTGATTCAGGATGCTCGATTTGGGGATGAGAATTTTTCCCCGCTCTCCCCACCGTCGTGGGTGGTGGTACCGGCTGTGTCGGGTCTGCCACCGTCTCCCTCTTCCTCTGCAAGGAAGGGAGGATGTGTCCGAGCCAATTTTGGTAACAATCCTGTTGTGAGAATTGAGGGCTTTGATTGCCTTGACAGGGACAGGCGAAATTGCAGCATCCCTGCTCTGGCTTAG
>Glyma20g24980.1 sequence type=predicted peptide gene model=Glyma20g24980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQFAVQNVVVPSHDEISVVCPKPRRLGLFNFPVNDPTVRPFRWHLSYHVEPCDSNSSGSNPLDNLLTKDGDFDVEQSWPVVAPSPLFFSGSPPSRAANPLIQDARFGDENFSPLSPPSWVVVPAVSGLPPSPSSSARKGGCVRANFGNNPVVRIEGFDCLDRDRRNCSIPALA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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