Glyma20g24850 - SoyBase

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Report for Sequence Feature Glyma20g24850

Feature Type:	gene_model
Chromosome:	Gm20
Start:	34492083
stop:	34496298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g24850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02540	AT	Annotation by Michelle Graham. TAIR10: Rad23 UV excision repair protein family \| chr3:533095-536151 REVERSE LENGTH=418	SoyBase	E_val: 0	ISS
GO:0006289	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0043130	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin binding	SoyBase	N/A	ISS
GO:0070628	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proteasome binding	SoyBase	N/A	ISS
KOG0011	KOG	Nucleotide excision repair factor NEF2, RAD23 component	JGI		ISS
PTHR10621	Panther	UV EXCISION REPAIR PROTEIN RAD23	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
PF09280	PFAM	XPC-binding domain	JGI		ISS
UniRef100_B9RSK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uv excision repair protein rad23, putative n=1 Tax=Ricinus communis RepID=B9RSK8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NFH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NFH7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g24850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g24850 not represented in the dataset	Glyma20g24850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g24850

Paralog	Evidence	Comments
Glyma10g42180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g24850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g114700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g24850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g24850

Limit To All Plant Sequences

>Glyma20g24850.3   sequence type=transcript   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTATTCTCGTCTGAACATTCTCTGGCTAGATAGTTTTTTCTTTTAAATAAATTTAATCTTCCGATTCATTGCTTGTGGGAACTAATGGCAAAGTGTTTGCTGCTGCTCCTCTGGATTATAATTATTAGTGGGAATTCTGTTTTCGGAGGTTTGGGATTCTTGGCATATGATAGTGAATAAGTTCCACATTACACTGTTTGGAGCATTACTTCATAGGAATATCAAACCAGTTTGTGCTATAAGAAGAAATCTGGGCTAGATACTAGTTCTAAATTCTGATTGCTATTCGTATTCATGGGAATTTCAACAATTTAGTTTATCTGAGTTTATGTACTGCTACAGTTGGATCAATAACCATGTTATCACTGGTTTATCAGAATTGGCACTGTCTTGACAACGAAATCTGTACTTTTTGTCTTTTTGAAGGTTGCATGTCTAAGTGCTTTATATGACCCAAATTCGGAGTTTTTATTTCAACAAATGTGTCAATGCTTCATCCTTTAATCATGTGGATTTCGTGATTTGTTTCTGTCATCCTCTGGTTTTCCTGAACTTCAATAATCAGTCTGTTACATTTGTTGTCATTGTGGCTATTCTTTTCAGGTTTCTGAAGTGAAAAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTACTACCTTGGAGGAGAATAAAGTAGCCGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCATTATCAACCAAGGCTCCACAGACAAGTACAGTTCCCGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCCTGCTCCTGCTGCAACTGGGGCACTGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGCTCCAGCCCCAGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCGTCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTGCAGTTACCTCAGCTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCTAATGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTGGACTTTTTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCAATGCTACAAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAGATCTACTTTTGAATTTGCCAAATTATTTCTTGTCATCTTTTTCTCTCGATGGGTCTTTGTTACACTCTATGTTTAATGAGGTAATGCTTGATAATGTCAAATCTCAAGTGGATAAGGGATGTTTTAGTCTCCTCCATATTATTGCCCTTGTATTTATCATTTCCAGCCCGTCGAGGGTTTCTTAGTATTCATATACATAGTTGTTTGCCTTGCATTACTGGTTTAATGTTCAGGGTTCAGTTCTTCCTTTTGGAAATATATTGACTTTTTGCTGTCAGTTCTATGTAAAATAGTTTTCTGTTTTTAAAAATAGAAGCGCAT

>Glyma20g24850.4   sequence type=transcript   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCAACTACTGGCAACATAAAATTAGCATATTTCGGGTATATCTCCTTTTATTTCACACTTCGCCTCACTCTTTCTTTCGTTCCTTTCTTCGCTACGTCGTCGTTAGGGTCTTCTTCGGATCGGTGGAACTTGACCCTGCCGGCGTGAATTCCGACGCTACTCGTGGCGCCGAATTGCTATAGCGGTGACGAATATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGGTTTCTGAAGTGAAAAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTACTACCTTGGAGGAGAATAAAGTAGCCGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCATTATCAACCAAGGCTCCACAGACAAGTACAGTTCCCGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCCTGCTCCTGCTGCAACTGGGGCACTGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGCTCCAGCCCCAGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCGTCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTGCAGTTACCTCAGCTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCTAATGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTGGACTTTTTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGGTTTTCTTCTTTGCCTTAGTTTATCATGGTATCCTATATTATCTTCTTCAGGGTTCCCTGATTTTTGTTCCTGCTACTGCAGCCAATGCTACAAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAGATCTACTTTTGAATTTGCCAAATTATTTCTTGTCATCTTTTTCTCTCGATGGGTCTTTGTTACACTCTATGTTTAATGAGGTAATGCTTGATAATGTCAAATCTCAAGTGGATAAGGGATGTTTTAGTCTCCTCCATATTATTGCCCTTGTATTTATCATTTCCAGCCCGTCGAGGGTTTCTTAGTATTCATATACATAGTTGTTTGCCTTGCATTACTGGTTTAATGTTCAGGGTTCAGTTCTTCCTTTTGGAAATATATTGACTTTTTGCTGTCAGTTCTATGTAAAATAGTTTTCTGTTTTTAAAAATAGAAGCGCAT

Coding sequences of Glyma20g24850

Limit To All Plant Sequences

>Glyma20g24850.1   sequence type=CDS   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGGTTTCTGAAGTGAAAAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTACTACCTTGGAGGAGAATAAAGTAGCCGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCATTATCAACCAAGGCTCCACAGACAAGTACAGTTCCCGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCCTGCTCCTGCTGCAACTGGGGCACTGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGCTCCAGCCCCAGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCGTCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTGCAGTTACCTCAGCTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCTAATGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTGGACTTTTTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCAATGCTACAAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAG

>Glyma20g24850.3   sequence type=CDS   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTACTACCTTGGAGGAGAATAAAGTAGCCGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCATTATCAACCAAGGCTCCACAGACAAGTACAGTTCCCGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCCTGCTCCTGCTGCAACTGGGGCACTGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGCTCCAGCCCCAGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCGTCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTGCAGTTACCTCAGCTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCTAATGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTGGACTTTTTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCAATGCTACAAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCTTGATAAATGAACCTGCTGAAGGTGGCGAAGGGAATATATTGGGGCAGATGGCTTCTGGAATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAG

>Glyma20g24850.4   sequence type=CDS   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGGTTTCTGAAGTGAAAAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTACTACCTTGGAGGAGAATAAAGTAGCCGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCATTATCAACCAAGGCTCCACAGACAAGTACAGTTCCCGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCCTGCTCCTGCTGCAACTGGGGCACTGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGCTCCAGCCCCAGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCGTCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTAGCCCGGGCGCCTGTAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTGCAGTTACCTCAGCTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCTAATGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTGGACTTTTTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGGTTTTCTTCTTTGCCTTAGTTTATCATGGTATCCTATATTATCTTCTTCAGGGTTCCCTGATTTTTGTTCCTGCTACTGCAGCCAATGCTACAAGAGCTTGGCAAGCAAAATCCCCATCTTATGAGATTGATTCGAGACCATCAAGCTGA

Predicted protein sequences of Glyma20g24850

Limit To All Plant Sequences

>Glyma20g24850.1   sequence type=predicted peptide   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLEENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPASTPPVSVAPQAPAPAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ*

>Glyma20g24850.3   sequence type=predicted peptide   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIHQGKVLRDATTLEENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPASTPPVSVAPQAPAPAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ*

>Glyma20g24850.4   sequence type=predicted peptide   gene model=Glyma20g24850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLEENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPASTPPVSVAPQAPAPAATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQVFFFALVYHGILYYLLQGSLIFVPATAANATRAWQAKSPSYEIDSRPSS*

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