SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G25480 | AT | Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein | chr1:8948467-8950876 FORWARD LENGTH=548 | SoyBase | E_val: 0 | ISS |
| GO:0010044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to aluminum ion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4711 | KOG | Predicted membrane protein | JGI | ISS | |
| PF11744 | PFAM | Aluminium activated malate transporter | JGI | ISS | |
| UniRef100_I1NFH0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFH0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9C6L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 4 n=1 Tax=Arabidopsis thaliana RepID=ALMT4_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma20g24800 not represented in the dataset |
Glyma20g24800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g114100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24800.2 sequence type=transcript gene model=Glyma20g24800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAACGGTGTCACTTGGCGGGTTCATTTGCTCTTACTTCGCTTCGCCACACCCGAAGGTAACAGTCCCTTCATTCTCTCCTTCAACTCTGTTCCTCTGTTACATTCCATCCAGATTTGCTCTCAGCCTCATCACCATCATCATTCCCTCCTTCTTCGCATTTAATAACCTACAGCAATCGGAGAGAATGGCCGCGAGAGTGGGGTCATTCAGACACAGTTTCTTGGAGAAAAGCAAAGAGAGGCTCCTTTCCAAGAAGGAATACCAAGATTTTGTTGGCTTCAACGGCGACCACGATGCCTCCCCCAAGCGTTCCTTCCTCGACGCGCTCTCTGATCGTGTCGTTAGCTTTCACAACTGGTCCAGAGACTTTGCCTCCAAATTGTACGAGATGGGTCGCTCTGACCGACGCAAAGTCCTCTTCGCCGTCAAAGCTGGCTTATCCTTAGCCATTGTCTCGCTTGTCATATACATTGAGGAGGAACAATTTAGCAAGTACTCTGTCTGGGCAATCCTCACTGTTGTCGTTGTTTTCGAATTCAGCATAGGTGCTACCCTTAACAAAGGTTTCAATCGTGCTTTGGGAACATTTTCTGCTGGAGTTCTTGCTCTGGGTATTGCACAGTTATCCGTGTTGGTTGGTCGAGCTTTTGAAGAGCTTATTATTGTGGTCTCTATTTTTATTGCTGGGTTTTGTGCGAGTTATGTGAAGCTGTACCCCGCGATGAAGCAATATGAATACGGTTTTCGTGTATTCTTGCTGACATTTTGTATTGTGTTAGTGTCCGGGAGAACCGGGTTGCAATTTTTCAGCACAGCTTTTTACAGATTGGTTCTAATTGGTATTGGTGCTGGTGTAAGTTTGTCTGTGAATATTTGCATTTATCCCATCTGGTCTGGGGAGGATCTGCACAAATTGGTGGTGAAAAATTTCATTGGAGTTGCCGCATCTTTAGAAGGTTGTGTAAATGGGTACCTACAATGCGTTGAATATGAGAGGATCCCATCCAAAATACTTGTTTATCAAGCCTCTGATGACCCTCTTTACCGTGGTTATAGAACAGCAGTGCAATCGTCAACTCAAGAGGAGACTCTGGTGGACTTTGCATTATGGGAACCACCTCATGGTCCATACAAGATGTTCAATTATCCTTGGAGAAGCTACGTCAAAGTCAGTGGAGCATTGAGGCATTGTGCTTTCATGGTCATGGCAATGCACGGATGCATACTTTCAGAAATACAGTCACCTCCGGAAAAGAGGCTGGTTTTCTATGATGAACTTCAGAAGGTTGGTGTTGAAGGAGCTAAAGTATTGCGTACACTTGGAAGCAAAGTGGAAAGGATGGAGAAGCTAAGCACCGGTGACATCCTCTTAGATGTTCATGAGGCAGCTGAGCAATTGCAGATGAAGATTGACAGATTGTCATTCCTCCTAGTGAATTATGAGAGCTGGGAAGCTGCAAGAGAGCATAAGGAAAAAGAACAACCTGAGAATTTGATTGATGTTAAGGACAATGAGAACAAGCCACCAGAGATCACTTCCCTCAATGAAATAGGGGATGATCCAAAACTTAGTGTAAGAATAGAGCCCTCCATGCTAGAATCCAACCTTCCACAGACTGCGAACAAGAGCTTTCTGGGGAAGTCACATCTTTCTTTTTTCGCAGATGGTATAGTAAATGAGCCTGAATCCAAAGTGTATGAAAGTGCGAGCTCCTTGTCTTTGGGAACATTTGCTTCGAATTTAATCGAGTTTGTTGCGAGGCTTCAAAATCTTGTGGATGAATTCCAAGATCTCAGTGAGAAGGCCAAATTTAAAGACCCCCTTGAACAACCTTTGCTCAAGTAGCTAGGAGTTAGTGGCCACTTGGGACAGGCTCTACTCTACAGTCTCCTTGTTTATAAATTGGAGGTTGTGAAAGATGTCAAACAGAAATATTTTGTTTCATTTATTAAAAATAAATTTGAAGCTGAAGATGCATTCTCTATTCTTGGCTTCTATAAATTAAATTCAATGTCCAAAATATCTCATCATCTTTATATACTCTGTATAATTTAAACAACCAACTTTGATTTGTTTAAGTTTTGTAAAGGTGTCTCTTCAATCTGCTAAAGTTCTGCAACATGAGCTTCTATTCAC
>Glyma20g24800.1 sequence type=CDS gene model=Glyma20g24800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAACGGTGTCACTTGGCGGGTTCATTTGCTCTTACTTCGCTTCGCCACACCCGAAGCAATCGGAGAGAATGGCCGCGAGAGTGGGGTCATTCAGACACAGTTTCTTGGAGAAAAGCAAAGAGAGGCTCCTTTCCAAGAAGGAATACCAAGATTTTGTTGGCTTCAACGGCGACCACGATGCCTCCCCCAAGCGTTCCTTCCTCGACGCGCTCTCTGATCGTGTCGTTAGCTTTCACAACTGGTCCAGAGACTTTGCCTCCAAATTGTACGAGATGGGTCGCTCTGACCGACGCAAAGTCCTCTTCGCCGTCAAAGCTGGCTTATCCTTAGCCATTGTCTCGCTTGTCATATACATTGAGGAGGAACAATTTAGCAAGTACTCTGTCTGGGCAATCCTCACTGTTGTCGTTGTTTTCGAATTCAGCATAGGTGCTACCCTTAACAAAGGTTTCAATCGTGCTTTGGGAACATTTTCTGCTGGAGTTCTTGCTCTGGGTATTGCACAGTTATCCGTGTTGGTTGGTCGAGCTTTTGAAGAGCTTATTATTGTGGTCTCTATTTTTATTGCTGGGTTTTGTGCGAGTTATGTGAAGCTGTACCCCGCGATGAAGCAATATGAATACGGTTTTCGTGTATTCTTGCTGACATTTTGTATTGTGTTAGTGTCCGGGAGAACCGGGTTGCAATTTTTCAGCACAGCTTTTTACAGATTGGTTCTAATTGGTATTGGTGCTGGTGTAAGTTTGTCTGTGAATATTTGCATTTATCCCATCTGGTCTGGGGAGGATCTGCACAAATTGGTGGTGAAAAATTTCATTGGAGTTGCCGCATCTTTAGAAGGTTGTGTAAATGGGTACCTACAATGCGTTGAATATGAGAGGATCCCATCCAAAATACTTGTTTATCAAGCCTCTGATGACCCTCTTTACCGTGGTTATAGAACAGCAGTGCAATCGTCAACTCAAGAGGAGACTCTGGTGGACTTTGCATTATGGGAACCACCTCATGGTCCATACAAGATGTTCAATTATCCTTGGAGAAGCTACGTCAAAGTCAGTGGAGCATTGAGGCATTGTGCTTTCATGGTCATGGCAATGCACGGATGCATACTTTCAGAAATACAGTCACCTCCGGAAAAGAGGCTGGTTTTCTATGATGAACTTCAGAAGGTTGGTGTTGAAGGAGCTAAAGTATTGCGTACACTTGGAAGCAAAGTGGAAAGGATGGAGAAGCTAAGCACCGGTGACATCCTCTTAGATGTTCATGAGGCAGCTGAGCAATTGCAGATGAAGATTGACAGATTGTCATTCCTCCTAGTGAATTATGAGAGCTGGGAAGCTGCAAGAGAGCATAAGGAAAAAGAACAACCTGAGAATTTGATTGATGTTAAGGACAATGAGAACAAGCCACCAGAGATCACTTCCCTCAATGAAATAGGGGATGATCCAAAACTTAGTGTAAGAATAGAGCCCTCCATGCTAGAATCCAACCTTCCACAGACTGCGAACAAGAGCTTTCTGGGGAAGTCACATCTTTCTTTTTTCGCAGATGGTATAGTAAATGAGCCTGAATCCAAAGTGTATGAAAGTGCGAGCTCCTTGTCTTTGGGAACATTTGCTTCGAATTTAATCGAGTTTGTTGCGAGGCTTCAAAATCTTGTGGATGAATTCCAAGATCTCAGTGAGAAGGCCAAATTTAAAGACCCCCTTGAACAACCTTTGCTCAAGTAG >Glyma20g24800.2 sequence type=CDS gene model=Glyma20g24800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAACGGTGTCACTTGGCGGGTTCATTTGCTCTTACTTCGCTTCGCCACACCCGAAGGTAACAGTCCCTTCATTCTCTCCTTCAACTCTGTTCCTCTGTTACATTCCATCCAGATTTGCTCTCAGCCTCATCACCATCATCATTCCCTCCTTCTTCGCATTTAATAACCTACAGCAATCGGAGAGAATGGCCGCGAGAGTGGGGTCATTCAGACACAGTTTCTTGGAGAAAAGCAAAGAGAGGCTCCTTTCCAAGAAGGAATACCAAGATTTTGTTGGCTTCAACGGCGACCACGATGCCTCCCCCAAGCGTTCCTTCCTCGACGCGCTCTCTGATCGTGTCGTTAGCTTTCACAACTGGTCCAGAGACTTTGCCTCCAAATTGTACGAGATGGGTCGCTCTGACCGACGCAAAGTCCTCTTCGCCGTCAAAGCTGGCTTATCCTTAGCCATTGTCTCGCTTGTCATATACATTGAGGAGGAACAATTTAGCAAGTACTCTGTCTGGGCAATCCTCACTGTTGTCGTTGTTTTCGAATTCAGCATAGGTGCTACCCTTAACAAAGGTTTCAATCGTGCTTTGGGAACATTTTCTGCTGGAGTTCTTGCTCTGGGTATTGCACAGTTATCCGTGTTGGTTGGTCGAGCTTTTGAAGAGCTTATTATTGTGGTCTCTATTTTTATTGCTGGGTTTTGTGCGAGTTATGTGAAGCTGTACCCCGCGATGAAGCAATATGAATACGGTTTTCGTGTATTCTTGCTGACATTTTGTATTGTGTTAGTGTCCGGGAGAACCGGGTTGCAATTTTTCAGCACAGCTTTTTACAGATTGGTTCTAATTGGTATTGGTGCTGGTGTAAGTTTGTCTGTGAATATTTGCATTTATCCCATCTGGTCTGGGGAGGATCTGCACAAATTGGTGGTGAAAAATTTCATTGGAGTTGCCGCATCTTTAGAAGGTTGTGTAAATGGGTACCTACAATGCGTTGAATATGAGAGGATCCCATCCAAAATACTTGTTTATCAAGCCTCTGATGACCCTCTTTACCGTGGTTATAGAACAGCAGTGCAATCGTCAACTCAAGAGGAGACTCTGGTGGACTTTGCATTATGGGAACCACCTCATGGTCCATACAAGATGTTCAATTATCCTTGGAGAAGCTACGTCAAAGTCAGTGGAGCATTGAGGCATTGTGCTTTCATGGTCATGGCAATGCACGGATGCATACTTTCAGAAATACAGTCACCTCCGGAAAAGAGGCTGGTTTTCTATGATGAACTTCAGAAGGTTGGTGTTGAAGGAGCTAAAGTATTGCGTACACTTGGAAGCAAAGTGGAAAGGATGGAGAAGCTAAGCACCGGTGACATCCTCTTAGATGTTCATGAGGCAGCTGAGCAATTGCAGATGAAGATTGACAGATTGTCATTCCTCCTAGTGAATTATGAGAGCTGGGAAGCTGCAAGAGAGCATAAGGAAAAAGAACAACCTGAGAATTTGATTGATGTTAAGGACAATGAGAACAAGCCACCAGAGATCACTTCCCTCAATGAAATAGGGGATGATCCAAAACTTAGTGTAAGAATAGAGCCCTCCATGCTAGAATCCAACCTTCCACAGACTGCGAACAAGAGCTTTCTGGGGAAGTCACATCTTTCTTTTTTCGCAGATGGTATAGTAAATGAGCCTGAATCCAAAGTGTATGAAAGTGCGAGCTCCTTGTCTTTGGGAACATTTGCTTCGAATTTAATCGAGTTTGTTGCGAGGCTTCAAAATCTTGTGGATGAATTCCAAGATCTCAGTGAGAAGGCCAAATTTAAAGACCCCCTTGAACAACCTTTGCTCAAGTAG
>Glyma20g24800.1 sequence type=predicted peptide gene model=Glyma20g24800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KTVSLGGFICSYFASPHPKQSERMAARVGSFRHSFLEKSKERLLSKKEYQDFVGFNGDHDASPKRSFLDALSDRVVSFHNWSRDFASKLYEMGRSDRRKVLFAVKAGLSLAIVSLVIYIEEEQFSKYSVWAILTVVVVFEFSIGATLNKGFNRALGTFSAGVLALGIAQLSVLVGRAFEELIIVVSIFIAGFCASYVKLYPAMKQYEYGFRVFLLTFCIVLVSGRTGLQFFSTAFYRLVLIGIGAGVSLSVNICIYPIWSGEDLHKLVVKNFIGVAASLEGCVNGYLQCVEYERIPSKILVYQASDDPLYRGYRTAVQSSTQEETLVDFALWEPPHGPYKMFNYPWRSYVKVSGALRHCAFMVMAMHGCILSEIQSPPEKRLVFYDELQKVGVEGAKVLRTLGSKVERMEKLSTGDILLDVHEAAEQLQMKIDRLSFLLVNYESWEAAREHKEKEQPENLIDVKDNENKPPEITSLNEIGDDPKLSVRIEPSMLESNLPQTANKSFLGKSHLSFFADGIVNEPESKVYESASSLSLGTFASNLIEFVARLQNLVDEFQDLSEKAKFKDPLEQPLLK* >Glyma20g24800.2 sequence type=predicted peptide gene model=Glyma20g24800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KTVSLGGFICSYFASPHPKVTVPSFSPSTLFLCYIPSRFALSLITIIIPSFFAFNNLQQSERMAARVGSFRHSFLEKSKERLLSKKEYQDFVGFNGDHDASPKRSFLDALSDRVVSFHNWSRDFASKLYEMGRSDRRKVLFAVKAGLSLAIVSLVIYIEEEQFSKYSVWAILTVVVVFEFSIGATLNKGFNRALGTFSAGVLALGIAQLSVLVGRAFEELIIVVSIFIAGFCASYVKLYPAMKQYEYGFRVFLLTFCIVLVSGRTGLQFFSTAFYRLVLIGIGAGVSLSVNICIYPIWSGEDLHKLVVKNFIGVAASLEGCVNGYLQCVEYERIPSKILVYQASDDPLYRGYRTAVQSSTQEETLVDFALWEPPHGPYKMFNYPWRSYVKVSGALRHCAFMVMAMHGCILSEIQSPPEKRLVFYDELQKVGVEGAKVLRTLGSKVERMEKLSTGDILLDVHEAAEQLQMKIDRLSFLLVNYESWEAAREHKEKEQPENLIDVKDNENKPPEITSLNEIGDDPKLSVRIEPSMLESNLPQTANKSFLGKSHLSFFADGIVNEPESKVYESASSLSLGTFASNLIEFVARLQNLVDEFQDLSEKAKFKDPLEQPLLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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