SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25800 | AT | Annotation by Michelle Graham. TAIR10: protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587 | SoyBase | E_val: 0 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0042325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of phosphorylation | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| KOG0211 | KOG | Protein phosphatase 2A regulatory subunit A and related proteins | JGI | ISS | |
| PTHR10648 | Panther | SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A | JGI | ISS | |
| PTHR10648:SF4 | Panther | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA R | JGI | ISS | |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| UniRef100_I1NFG9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFG9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FVD7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform n=1 Tax=Medicago sativa subsp. x varia RepID=Q9FVD7_MEDSV | SoyBase | E_val: 0 | ISS |
|
Glyma20g24790 not represented in the dataset |
Glyma20g24790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g114000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24790.1 sequence type=CDS gene model=Glyma20g24790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGACGAACCATTATATCCAATAGCGGTGCTTATAGATGAGTTGAAAAATGATGACATCCAGCTGCGGTTAAACTCAATTCGTAGGCTATCAACAATTGCACGTGCTCTTGGGGAGGAGCGAACCCGTCGAGAATTAATTCCATTTTTAAGTGAAAATAATGATGATGATGACGAAGTACTTCTTGCAATGGCAGAAGAGTTGGGAGTGTTTATTCCTTATGTTGGGGGAGTGGAACATGCTAGTGTGTTGCTGCCACCGCTGGAGACACTTTGCACTGTTGAGGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCATTGGTGAAGAGATTGGCAGCAGGTGAATGGTTTACCGCCCGAGTCTCTGCATGTGGACTATTTCATATTGCATACCCTAGCGCACCAGAAACATCAAAGACAGAGTTGAGATCAATATACAGTCAGTTATGTCAGGATGATATGCCTATGGTTAGAAGGTCGGCTGCATCAAATCTTGGGAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCTGATGTCATGTCAATTTTTGACGATCTTACTCAAGATGATCAAGATTCTGTCAGATTGTTGGCTGTGGAGGGCTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGATTGTGTTGCACATATACTCCCGGTTATTGTTAACTTCTCCCAGGATAAGTCTTGGCGTGTGCGTTACATGGTTGCAAATCAATTGTATGAGCTTTGCGAAGCTGTAGGCCCTGAACCTACCAGAACGGAATTGGTACCTGCTTATGTGCGGTTGCTTCGTGATAATGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCATCAGATTCTTCACAGCATGTCCGGTCTGCTTTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTGGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGACGTACGCCTAAACATTATCAGCAAGCTTGATCAAGTGAATCAGGTTATAGGAATCGATCTGTTATCTCAGTCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAATATATACCCTTATTGGCAAGTCAATTGGGGGTTAGGTTTTTTGATGACAAACTTGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGGTTCATTCAATTCGCGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGGTTTTGGAGATGAACAACAATCCACACTATTTGTATCGGATGACCATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTTCAAACTTGTTACCGGTTGTTCTTGCTGCATCTAAAGACAGAGTGCCCAACATAAAGTTCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTGATGTTGACGTGCGATTTTTCTCCAACCAAGCACTACAAGCAATTGATCATGTCATGATGTCTTGCTAG
>Glyma20g24790.1 sequence type=predicted peptide gene model=Glyma20g24790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRRELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHASVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVEYYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPETSKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADVMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVRFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQVLEMNNNPHYLYRMTILRAISLLAPVMGPEITCSNLLPVVLAASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPCLVELSEDPDVDVRFFSNQALQAIDHVMMSC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
