Glyma20g24750 - SoyBase

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Report for Sequence Feature Glyma20g24750

Feature Type:	gene_model
Chromosome:	Gm20
Start:	34396805
stop:	34401408
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g24750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68650	AT	Annotation by Michelle Graham. TAIR10: Uncharacterized protein family (UPF0016) \| chr1:25775825-25777683 FORWARD LENGTH=228	SoyBase	E_val: 4.00E-117	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2881	KOG	Predicted membrane protein	JGI		ISS
PTHR12608	Panther	TRANSMEMBRANE PROTEIN HTP-1 RELATED	JGI		ISS
PF01169	PFAM	Uncharacterized protein family UPF0016	JGI		ISS
UniRef100_B9ST29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein TPARL, putative n=1 Tax=Ricinus communis RepID=B9ST29_RICCO	SoyBase	E_val: 9.00E-127	ISS
UniRef100_I1NFG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NFG4_SOYBN	SoyBase	E_val: 1.00E-161	ISS

Expression Patterns of Glyma20g24750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g24750 not represented in the dataset	Glyma20g24750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g24750

Paralog	Evidence	Comments
Glyma10g42300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g24750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g113400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g24750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g24750

Limit To All Plant Sequences

>Glyma20g24750.2   sequence type=transcript   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCAAGATATGTTTAGTGTTATTGATTTATTTCCTCTTTGCATAGTTCCTGACAAAGAAGACAGGGTGGCCTTGGTATTTGTTTTTGTAGTCTAGAGAGTAGAATTAGAACTCTGCCTGACTGTTTGATATCATGATTTCTAGATACTGGCTATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGAAGGCTGTGCTTTTGAGGGGATGAAAAACTTTTCCATCATTGGAGCAGTAGTTCAAAGTGAAACTGGTAGGTCACAACTCATTGTGCACCCAATTTGGGTGCACTTAAGTTATGTACAATAATCTCTCTATGCAAAGTGGGTAGAACCCACCCAAGTACTGTAACTTGACTGGTTATCACTCGTTATTTTTGTCTCTCACAAGGTTGATCTTTAGTTGTTTCCCCCTAAAGTGTCAAGTACCATTGTAGAAGTCTTGCTCAACACATAATTTCAACTATAACAAACTTAAAAATATTCTAGTTAACTGCTCCACCCC

>Glyma20g24750.3   sequence type=transcript   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGGAGGGAATTGAATCCCATGCTCTGCACAATATAATTTTTTAAAAGCAAAAATAACCACGCGCTCACACGCGCACCTTCCACTCTGAGAAGCGAGTATTTCTCCCTCTTCAATGTTCTCCCTCCTCCGATGACTTTCACCATACAACCAACGAAGAACACACTCTCACATATTATTAGCTTTTAGCTCTCTCTCTCTCTCTCTCAGTCCTTCTTCTTCGCCCAGCCAACATGAGCTCAATCGTTCAGGGTTTCACCAAGTCGCTGGCCATGACCATTCTCTCTGAGATCGGCGACAAAACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGAAGGCTGTGCTTTTGGTTAGTGATTATTCTTCTGCGTTTTTTTACAAGACATGTTTAGCAAATATGTTTGTTATTATGGTTGGAGTTGGTTGCTAAAAAAGCTCAGCTTCATGCCTAATCCTCCCTGGGTCATAGATTTCATTATTTCGACCCTTTTGTAGTTCAAAATAAATTTACCATTGTAGAATGATAGCCAAATTCAATATAAATAGTCAACATGAGTGGATTGTTCTGTTTAGAT

>Glyma20g24750.4   sequence type=transcript   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAAAATTAAATGCAATGGCTAAAATAAGCAAAAATAGACATGAAAGACAAGCATCTTTATGATGCTTATTTTTAATAATGATTTTTATCCAGATTCTGAGGGAGGGAATTGAATCCCATGCTCTGCACAATATAATTTTTTAAAAGCAAAAATAACCACGCGCTCACACGCGCACCTTCCACTCTGAGAAGCGAGTATTTCTCCCTCTTCAATGTTCTCCCTCCTCCGATGACTTTCACCATACAACCAACGAAGAACACACTCTCACATATTATTAGCTTTTAGCTCTCTCTCTCTCTCTCTCAGTCCTTCTTCTTCGCCCAGCCAACATGAGCTCAATCGTTCAGGGTTTCACCAAGTCGCTGGCCATGACCATTCTCTCTGAGATCGGCGACAAAACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGAAGGCTGTGCTTTTGAGGGGATGAAAAACTTTTCCATCATTGGAGCAGTAGTTCAAAGTGAAACTGGTAGGTCACAACTCATTGTGCACCCAATTTGGGTGCACTTAAGTTATGTACAATAATCTCTCTATGCAAAGTGGGTAGAACCCACCCAAGTACTGTAACTTGACTGGTTATCACTCGTTATTTTTGTCTCTCACAAGGTTGATCTTTAGTTGTTTCCCCCTAAAGTGTCAAGTACCATTGTAGAAGTCTTGCTCAACACATAATTTCAACTATAACAAACTTAAAAATATTCTAGTTAACTGCTCCACCCCAAAATTAAAATTCTTTCTGTTCAACGTTGATGAAGTTAGTGA

Coding sequences of Glyma20g24750

Limit To All Plant Sequences

>Glyma20g24750.1   sequence type=CDS   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCAATCGTTCAGGGTTTCACCAAGTCGCTGGCCATGACCATTCTCTCTGAGATCGGCGACAAAACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTAACAATTTCTACTCCTTTTTATTATCACTACCTGTTGTCCATCTCCCCACCCCCTCGTCTTTTTTGTTAA

>Glyma20g24750.2   sequence type=CDS   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGA

>Glyma20g24750.3   sequence type=CDS   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCAATCGTTCAGGGTTTCACCAAGTCGCTGGCCATGACCATTCTCTCTGAGATCGGCGACAAAACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGA

>Glyma20g24750.4   sequence type=CDS   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCAATCGTTCAGGGTTTCACCAAGTCGCTGGCCATGACCATTCTCTCTGAGATCGGCGACAAAACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCAAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGTTCTTGTTGGCTGGGCTGCTCCAAATCTGATCTCTCGTACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTAAAAGACGCTATATTTGAAGAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCTATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTGCTGCTGCTGTTGTTGGAGGAAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGA

Predicted protein sequences of Glyma20g24750

Limit To All Plant Sequences

>Glyma20g24750.1   sequence type=predicted peptide   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIVQGFTKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSVLVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTAAAVVGGKSLASQISEKIVTISTPFYYHYLLSISPPPRLFC*

>Glyma20g24750.2   sequence type=predicted peptide   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHPRRLVLSGCLSALIVMTILSVLVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES*

>Glyma20g24750.3   sequence type=predicted peptide   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIVQGFTKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSVLVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES*

>Glyma20g24750.4   sequence type=predicted peptide   gene model=Glyma20g24750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIVQGFTKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSVLVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES*

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