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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10420 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3239307-3242274 FORWARD LENGTH=684 | SoyBase | E_val: 0 | ISS |
| GO:0006777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| PTHR20953 | Panther | KINASE-RELATED | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_B9T556 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T556_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NFG0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFG0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g24740 not represented in the dataset |
Glyma20g24740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g113300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24740.2 sequence type=transcript gene model=Glyma20g24740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCCTCTGACAAAACCAAACCGTTAACGTCTCTAAACTCAACACAAGACTTGCAAGTGTTTGTGTCCTCTCCCTCCTAAAGTGCTAATAATAATGTAAAATAAAAATCCCACACAATAGAAGAAAGAAGATACCACAGAATCTTCTAATCTTCCCTCTTCTCTCTCCTTCTATTTATCCTTCCCTCCATAACAGTAACAACCACCACCACCTCTGCAACACAACACACATAACACGTAACAAAGAGAATGAGAGCGCTAAATTCGCACGTGCTCCTCGTAGATCTTCACTCCCACCATCACGTGCCCACCTCAACCCTCTCCTACCTCAGAAACTCCCGCTTCATATCATCCCTCCGTCGACGCTCCCCAAGAACCGGAATCCGATGTACGGCGTCGCCGGAGATTCGCCGCCCCTCCGATCGCTTCTACGGCTCCTCGCCGTCGACGTCGCGCCCGGAGGACCTCAACCTCTTCCTGGAACTGCTCCCTCTGAAGATGCGAAGGGAACTCTATCGCCACCGCGAAATCGGAGGCCTCATAGAGATTGTCATGGATTTGGGAAGAAAACCTCTCGCCAGGTTCCCTTCCGGTGATTGGGTCATCTCTGAACAACCCATAGCGCAAGAGGATTTACGCCATGCCATTTCCAAGGTTGGTGAGTTTTCTGATGACAACAGGTCAGGTATTGATAGGTCTTTGCATCGGATAAGCGCGATTCGGAATCGGAAAATGCAAATCATTGGGCTTACTTGTCGGGTGGGTCGAGCTGTGGGTGGCAGTGCTGAAATTATACGTGATTTGGTTGAGGATGGAGGTTCTATCTTGGTCATTGGACCTCCTGGAGTTGGCAAAACAACCTTAATCAGAGAGATTGCTAGGATGCTGGCTGATGAGTTCAGGAAGCGTGTTGTAATAGTGGATACATCTAATGAAATTGGAGGTGATGGAGATGTTCCTCATGCAGGAATAGGCAGGGCCAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCACATGCCTGAAACCATTATTATTGATGAAATTGGAACGGAGCTTGAGGCATTGGCAGCCAGTACTATTGCTCAAAGAGGAGTTCAATTGGTTGGAACGGCACATGGAATGACCATTGAAAACATAATAAAAAATCCTTATCTTCAGATTCTTGTTGGTGGCATAGAGAGCGTAACCCTTGGGGATGAGGAGGCCAGGAAAAGAAAAGTGCAGAAGACAATTCTCGAAAGGAAAGGACCCCCTACATTTTCATGTGCGGTTGAAATGATATCTAAAACTGAATGCCGTGTTCATCATAGATTAGATGCAACTGTGGATGCCATTTTGGCAGGAAAACCTCCATTATTTGAAATCCGTCAATGGGATGATTCTGACAACGAGTTGCCAAAATATGCTCCATTGCCCGAAGAAAATCTTGGAGAAACTTCTGACTTAACTAACAATAATATCACGAGTTCTGACAATGAACCTAGTGAGGATGATAAAGATCACCCACGTACTTGGTCCACGAAATGGAGTACCAGTGGACCTGTGATGACGAGGAGTTCACCAATGCAAGTTTATACTTACAAGATTCTTGAAGCTGATCTGCTACAAGTGGCCAAGGTAATGGGGCTTGAAGATGTAATAGATGTGACTGATGACATTGGAACTGCTGAAGCAATTCTAGCATCCAGTTCTGAGATACGACAAAACCCATGGATCCGTGGTGTGGCAAAGTTCCATCACGTACCTGTATTTGTTATCAAGTCCAATACCATGGCACAAATGGTCAAGGCAGTGCGCATGATCCTTGGGCTAGAATCCTTTGGCCCTACACCAAAGAAGCCATTAAATGAATGCTTGGATATTGAAATTGAGGACGATGAACCAAAACGAAAACCATCTTTGGAAGAGATTGATGCCTTGGAGGTCCGGCTTGCAATAGAGTACATTGTGATTCCTGGTGGAGAAGCTGTGGAACTTCTTCCTAGACGTTCTGAAATTATTGCCCGGCAGCTTGAACTCGTTCAAAGTTATCAGTTGGCTGCTGAAAAGTCAGGTACCGATCAGAATCCCAGGTTGCAAATTCTTCCATTGAGGCTAAATACAAAAAAAGCCTCTAAATCTACTGTTGCCCGCAAGAAAACAAGTCCTACCTCAATGTCTACTGGTGACAGCGGCAATGGCACCAGTGTTACCAGGCTTCCTATTTTGCCTGAATAATTCAATTCTTTCCCCAATTCTAACGATTCACTTCACTGGTTTGTACATGTATGATGTATGTAACATGTACAGTCATACAAGTGGTGTAAATAATTTATTCATAGCCTAAGAGCTTGTATCTCAATTGGGGTGTGACATTTATGACGGAAGTTTGATCCTCCGCCAAGCTACCCCTTCTTGTACCAAGGTATATATATTGAAAAAATCAATCTACATAAAATGTAATATATCATTATTTTACTCCTCCAATGTAGTTCAATTTATAATGGTACACATATGTATTAGTTCGTTAACTTGTGTAGCTAGAGTGTCAAGCATGCACTTAAGCATTCAAAATATAGAAACAC
>Glyma20g24740.1 sequence type=CDS gene model=Glyma20g24740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGCGCTAAATTCGCACGTGCTCCTCGTAGATCTTCACTCCCACCATCACGTGCCCACCTCAACCCTCTCCTACCTCAGAAACTCCCGCTTCATATCATCCCTCCGTCGACGCTCCCCAAGAACCGGAATCCGATGTACGGCGTCGCCGGAGATTCGCCGCCCCTCCGATCGCTTCTACGGCTCCTCGCCGTCGACGTCGCGCCCGGAGGACCTCAACCTCTTCCTGGAACTGCTCCCTCTGAAGATGCGAAGGGAACTCTATCGCCACCGCGAAATCGGAGGCCTCATAGAGATTGTCATGGATTTGGGAAGAAAACCTCTCGCCAGGTTCCCTTCCGGTGATTGGGTCATCTCTGAACAACCCATAGCGCAAGAGGATTTACGCCATGCCATTTCCAAGGTTGGTGAGTTTTCTGATGACAACAGGTCAGGTATTGATAGGTCTTTGCATCGGATAAGCGCGATTCGGAATCGGAAAATGCAAATCATTGGGCTTACTTGTCGGGTGGGTCGAGCTGTGGGTGGCAGTGCTGAAATTATACGTGATTTGGTTGAGGATGGAGGTTCTATCTTGGTCATTGGACCTCCTGGAGTTGGCAAAACAACCTTAATCAGAGAGATTGCTAGGATGCTGGCTGATGAGTTCAGGAAGCGTGTTGTAATAGTGGATACATCTAATGAAATTGGAGGTGATGGAGATGTTCCTCATGCAGGAATAGGCAGGGCCAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCACATGCCTGAAACCATTATTATTGATGAAATTGGAACGGAGCTTGAGGCATTGGCAGCCAGTACTATTGCTCAAAGAGGAGTTCAATTGGTTGGAACGGCACATGGAATGACCATTGAAAACATAATAAAAAATCCTTATCTTCAGATTCTTGTTGGTGGCATAGAGAGCGTAACCCTTGGGGATGAGGAGGCCAGGAAAAGAAAAGTGCAGAAGACAATTCTCGAAAGGAAAGGACCCCCTACATTTTCATGTGCGGTTGAAATGATATCTAAAACTGAATGCCGTGTTCATCATAGATTAGATGCAACTGTGGATGCCATTTTGGCAGGAAAACCTCCATTATTTGAAATCCGTCAATGGGATGATTCTGACAACGAGTTGCCAAAATATGCTCCATTGCCCGAAGAAAATCTTGGAGAAACTTCTGACTTAACTAACAATAATATCACGAGTTCTGACAATGAACCTAGTGAGGATGATAAAGATCACCCACGTACTTGGTCCACGAAATGGAGTACCAGTGGACCTGTGATGACGAGGAGTTCACCAATGCAAGTTTATACTTACAAGATTCTTGAAGCTGATCTGCTACAAGTGGCCAAGGTAATGGGGCTTGAAGATGTAATAGATGTGACTGATGACATTGGAACTGCTGAAGCAATTCTAGCATCCAGTTCTGAGATACGACAAAACCCATGGATCCGTGGTGTGGCAAAGTTCCATCACGTACCTGTATTTGTTATCAAGTCCAATACCATGGCACAAATGGTCAAGGCAGTGCGCATGATCCTTGGGCTAGAATCCTTTGGCCCTACACCAAAGAAGCCATTAAATGAATGCTTGGATATTGAAATTGAGGACGATGAACCAAAACGAAAACCATCTTTGGAAGAGATTGATGCCTTGGAGGAGGTCCGGCTTGCAATAGAGTACATTGTGATTCCTGGTGGAGAAGCTGTGGAACTTCTTCCTAGACGTTCTGAAATTATTGCCCGGCAGCTTGAACTCGTTCAAAGTTATCAGTTGGCTGCTGAAAAGTCAGGTACCGATCAGAATCCCAGGTTGCAAATTCTTCCATTGAGGCTAAATACAAAAAAAGCCTCTAAATCTACTGTTGCCCGCAAGAAAACAAGTCCTACCTCAATGTCTACTGGTGACAGCGGCAATGGCACCAGTGTTACCAGGCTTCCTATTTTGCCTGAATAA >Glyma20g24740.2 sequence type=CDS gene model=Glyma20g24740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGCGCTAAATTCGCACGTGCTCCTCGTAGATCTTCACTCCCACCATCACGTGCCCACCTCAACCCTCTCCTACCTCAGAAACTCCCGCTTCATATCATCCCTCCGTCGACGCTCCCCAAGAACCGGAATCCGATGTACGGCGTCGCCGGAGATTCGCCGCCCCTCCGATCGCTTCTACGGCTCCTCGCCGTCGACGTCGCGCCCGGAGGACCTCAACCTCTTCCTGGAACTGCTCCCTCTGAAGATGCGAAGGGAACTCTATCGCCACCGCGAAATCGGAGGCCTCATAGAGATTGTCATGGATTTGGGAAGAAAACCTCTCGCCAGGTTCCCTTCCGGTGATTGGGTCATCTCTGAACAACCCATAGCGCAAGAGGATTTACGCCATGCCATTTCCAAGGTTGGTGAGTTTTCTGATGACAACAGGTCAGGTATTGATAGGTCTTTGCATCGGATAAGCGCGATTCGGAATCGGAAAATGCAAATCATTGGGCTTACTTGTCGGGTGGGTCGAGCTGTGGGTGGCAGTGCTGAAATTATACGTGATTTGGTTGAGGATGGAGGTTCTATCTTGGTCATTGGACCTCCTGGAGTTGGCAAAACAACCTTAATCAGAGAGATTGCTAGGATGCTGGCTGATGAGTTCAGGAAGCGTGTTGTAATAGTGGATACATCTAATGAAATTGGAGGTGATGGAGATGTTCCTCATGCAGGAATAGGCAGGGCCAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCACATGCCTGAAACCATTATTATTGATGAAATTGGAACGGAGCTTGAGGCATTGGCAGCCAGTACTATTGCTCAAAGAGGAGTTCAATTGGTTGGAACGGCACATGGAATGACCATTGAAAACATAATAAAAAATCCTTATCTTCAGATTCTTGTTGGTGGCATAGAGAGCGTAACCCTTGGGGATGAGGAGGCCAGGAAAAGAAAAGTGCAGAAGACAATTCTCGAAAGGAAAGGACCCCCTACATTTTCATGTGCGGTTGAAATGATATCTAAAACTGAATGCCGTGTTCATCATAGATTAGATGCAACTGTGGATGCCATTTTGGCAGGAAAACCTCCATTATTTGAAATCCGTCAATGGGATGATTCTGACAACGAGTTGCCAAAATATGCTCCATTGCCCGAAGAAAATCTTGGAGAAACTTCTGACTTAACTAACAATAATATCACGAGTTCTGACAATGAACCTAGTGAGGATGATAAAGATCACCCACGTACTTGGTCCACGAAATGGAGTACCAGTGGACCTGTGATGACGAGGAGTTCACCAATGCAAGTTTATACTTACAAGATTCTTGAAGCTGATCTGCTACAAGTGGCCAAGGTAATGGGGCTTGAAGATGTAATAGATGTGACTGATGACATTGGAACTGCTGAAGCAATTCTAGCATCCAGTTCTGAGATACGACAAAACCCATGGATCCGTGGTGTGGCAAAGTTCCATCACGTACCTGTATTTGTTATCAAGTCCAATACCATGGCACAAATGGTCAAGGCAGTGCGCATGATCCTTGGGCTAGAATCCTTTGGCCCTACACCAAAGAAGCCATTAAATGAATGCTTGGATATTGAAATTGAGGACGATGAACCAAAACGAAAACCATCTTTGGAAGAGATTGATGCCTTGGAGGTCCGGCTTGCAATAGAGTACATTGTGATTCCTGGTGGAGAAGCTGTGGAACTTCTTCCTAGACGTTCTGAAATTATTGCCCGGCAGCTTGAACTCGTTCAAAGTTATCAGTTGGCTGCTGAAAAGTCAGGTACCGATCAGAATCCCAGGTTGCAAATTCTTCCATTGAGGCTAAATACAAAAAAAGCCTCTAAATCTACTGTTGCCCGCAAGAAAACAAGTCCTACCTCAATGTCTACTGGTGACAGCGGCAATGGCACCAGTGTTACCAGGCTTCCTATTTTGCCTGAATAA
>Glyma20g24740.1 sequence type=predicted peptide gene model=Glyma20g24740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRALNSHVLLVDLHSHHHVPTSTLSYLRNSRFISSLRRRSPRTGIRCTASPEIRRPSDRFYGSSPSTSRPEDLNLFLELLPLKMRRELYRHREIGGLIEIVMDLGRKPLARFPSGDWVISEQPIAQEDLRHAISKVGEFSDDNRSGIDRSLHRISAIRNRKMQIIGLTCRVGRAVGGSAEIIRDLVEDGGSILVIGPPGVGKTTLIREIARMLADEFRKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHNVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIENIIKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFSCAVEMISKTECRVHHRLDATVDAILAGKPPLFEIRQWDDSDNELPKYAPLPEENLGETSDLTNNNITSSDNEPSEDDKDHPRTWSTKWSTSGPVMTRSSPMQVYTYKILEADLLQVAKVMGLEDVIDVTDDIGTAEAILASSSEIRQNPWIRGVAKFHHVPVFVIKSNTMAQMVKAVRMILGLESFGPTPKKPLNECLDIEIEDDEPKRKPSLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIIARQLELVQSYQLAAEKSGTDQNPRLQILPLRLNTKKASKSTVARKKTSPTSMSTGDSGNGTSVTRLPILPE* >Glyma20g24740.2 sequence type=predicted peptide gene model=Glyma20g24740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRALNSHVLLVDLHSHHHVPTSTLSYLRNSRFISSLRRRSPRTGIRCTASPEIRRPSDRFYGSSPSTSRPEDLNLFLELLPLKMRRELYRHREIGGLIEIVMDLGRKPLARFPSGDWVISEQPIAQEDLRHAISKVGEFSDDNRSGIDRSLHRISAIRNRKMQIIGLTCRVGRAVGGSAEIIRDLVEDGGSILVIGPPGVGKTTLIREIARMLADEFRKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHNVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIENIIKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFSCAVEMISKTECRVHHRLDATVDAILAGKPPLFEIRQWDDSDNELPKYAPLPEENLGETSDLTNNNITSSDNEPSEDDKDHPRTWSTKWSTSGPVMTRSSPMQVYTYKILEADLLQVAKVMGLEDVIDVTDDIGTAEAILASSSEIRQNPWIRGVAKFHHVPVFVIKSNTMAQMVKAVRMILGLESFGPTPKKPLNECLDIEIEDDEPKRKPSLEEIDALEVRLAIEYIVIPGGEAVELLPRRSEIIARQLELVQSYQLAAEKSGTDQNPRLQILPLRLNTKKASKSTVARKKTSPTSMSTGDSGNGTSVTRLPILPE*
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