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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G55820 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22586287-22594035 FORWARD LENGTH=1826 | SoyBase | E_val: 3.00E-56 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009957 | GO-bp | Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3223 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF03941 | PFAM | Inner centromere protein, ARK binding region | JGI | ISS | |
| UniRef100_UPI000233D0B2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D0B2 related cluster n=1 Tax=unknown RepID=UPI000233D0B2 | SoyBase | E_val: 0 | ISS |
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Glyma20g24645 not represented in the dataset |
Glyma20g24645 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g112200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24645.1 sequence type=CDS gene model=Glyma20g24645 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGCGATGGAGAAGCACGTCGTGCAGATCTTCGAGCGAAAGAAGCGAATCATCGACCAATCACGACAACAGTGCCATCTCTGGGAGCAACACCTTTTCCCCAAACTCCGCCTCAACGGAATTCCCCCTCCGCCATGGCTCTGCAACTCTTCCCGTCACGCAGATCCACAAGGGTTAAGCAAAGATGATCTCGTTTCCGAAGTTCTAATTTCGCAACCACAATATAGAGTTCCTTTCCCCAGTGTGTGCAGCAATCTCGATTCTGTGTCCTATGGTGTTCAGTATCCAATTGGTTTGCATAATGAAGGTCGTGCTTTAGAAAAGGAGTGTAACACGGGAGATGGGGTTTCGAATTTTCCAGATTGTCCTGTCAACTATGCTGTATGTGCCTCAAGTGGTCCTCCTGAATTGGATTCAGGTGCTGTATCACCACCTCAGAATCAGATTGAAACAAGGGCCTCAGACAGTCACCACGACCCAGCTCCGTCTCTCGCAAAGTTGCAAAGGTCAAAGTCGAGGCAGAAGGCTCTGGAGCTACGTAATAGTGCAAAAGCACCCAGACGATTGTCAGGAGAAGATGATAATGCCTGTGTCTGTGCTGGCACAGTTACAGGTTCTGCACCCTCAACTCAAGAGGCAGAACATGCAATGGAGTCGGATGTGGTCAAAGATTTTCATTCCAACATCCAAAGTTGTTCCATGGAAGAAATGGAAGCATGTGTCTATGTAACTAACTACTCTGGCCGGATGACAAGATCTAAAAGCTCATCCCAGAAATTCAACTCTTTGAATGTTGCTAGTCCTTCTGTAGCGAAGGAAGATGGCCCTCTGCCTAATAATTTGAATGAGTCATTCGAGATAGTCAACCAACCTTGTTTTGCAAATGCAAGTTGTGGCATCAATGAAGCAAATAAACGAGAGTATCAGAGCAAGGAAGCTGGAAAAAGTGTGTATGATGAGAGATTAACAGAATCTAGAAGTTCTAGCCAGGCCAGATGTAACCGTGAATTGTTGAAGCTTGATAGCACCTTGGGCAGTGGCAAAGGAGTTGACTTCTGTGATCATAGACAACCAATTACACATGCTCAACTAACAGATTTAAGCAAAGCCTCTGATTGTAACAATGGAAGTGGTAGGAATACAGTTAAAGATGGCAATTCCTGCCTCAGCAAACAAGAAAGTAACATTCATGGTATGATAAAGTTACTTAGAGGTTCCTGCCCGTCACCAGGTCATGATCTTATGATGACTGGTGGTTTTGTAAGGTCTATTGACAAATCAGTGCCATTACCTCAACCTTCAATTTCACAGAATTCACAGGATCTTGTGCTGTCTGTTGTTGGGACATTCAATAGTCAAAAGGATCTGGACTTTTCTGCGCTAAAACCAAACGATCGTTTGAGTAGAAGTGGTTCTGAAAAGATTGAAAAAGTACTGAAGTCTTCCAGATACAATTTCTGTGAGCAGAGTGCTACCTGCTCTGAATCTGCTGGTAAGAAGTCTTGGAATGTACCGCCTACCAAACTGGATGCTAGAAGGTTATCCTCAAGTCCAGAGTATTCCAAATTAGATACAGAAATTGGCAGGAATTCTGCAGACAAGGAGAACGTTGCGGCACTAGCTGCTTCTGGAAAAATGAGGGCTGTGGTTACTTCTGCAAATGAAGGATCATTAAGGCCAGTGAGTTCTTCCAATTTATATGGTGGGCCTTCAAATTTAGAATCAGTATATGTTGAAGCAGCGGTGGATGAGAAAGTCTTGGATGTTCAAGAAAATATACCGTATGGTGCCCTTCCCACTGATAATGTTGAGCACAGATCTGCTGCAATTGTTGGCAAAGTTGAAGCTGACTTTGATGGATTAGTTGAAAAAGATCCTTATTGTGTTATCCCTAAGGTTGGGCAGAATGTATCAGTCTTGAAGCCGCCCACTGATTTTACCATGTCTGTGATGCCTAAGCAACTTGATTTTGATGATGTAGAGGAGACAAGTATGAGTGGAATTTGTAGTCCTGATTTGAAAGAGGGTCAACAGGGAGTGTCACCAGAAGAACCTCTGAACTCTTTGGAACCTGTAAAATTACTTGAAGAGGAAACTTCTTCTGTATGCCAAAGTAAGTGCAACTCCTTAGGGGAGATGCCTTCGCTGCAAATGCAGGAAGTACCGATCAGAGAAGAGGAGCCTCGTATGGAATATTGTGCAAGTCACTTAGAGGAGGAAGATATAGCTAGGGAAACACTAAGTGCCGCGCCACCAAACAAAGAGATGCCTATGGTTCAGAATGGATTCTGTATTCTTACTTCTTCGTTGATGAATCATTCTTGTCCTTCACAAGTTGCCGGTGAAAATTCATCAAGAAGTTTGTCAAAAGAAGTTATGCCAACCAAATTTGTTTCAGTAAACAGTACACTAGAAAATGATGAAAGTAGTGCTAAGTTGGCAGATTCTTCTGAAGCAGTTACGGGAAATGATCTGCATAAATCCACAGATGCAAATGTTACAAATTTCACTGTTGCGTTCCCATTTTCTGCTCCCATGGCTGATGTGAATGTTGGTTTGGCACGACAGGGCCCTAATAGCATTACCTTGTGTCAAGATGGTGACGTGTTGCGGAAGACATTGCTCAGCGAAGGAAAAATTACCAGTTTTTCACCTGATTTCCAGATTTTCAGAAGTTCCACTAAAAGTTTCACTTATGATGTGGAACATTCTTGTCCTCAGCATAAAAGAAGGAAGATTGAAATTGAAACGGAGAGATTTCGAGCCGCCTCTTCAAACCTCTTGGAAAAACCATGTGATTCTATTGACCAAAGGCCCGCAAGTAGAAACTTGAGTATTGAAGAAGACAGCCGGGAGATTGCCCTAGAAGTTCAAAATTTGCCATCTGATCCAGAGGATGATATAGGACATCAATCTATTAGTAACATCCCAACAGATGAAATGCAATACAACGGGGAATGCCAAACAATGGAAGACTCTTCACTTAAAGTGCGAAAAGAAGAGAAATGTACTTTGGATGGAAGAGACAGAAGTGAAGACACCCTTCTGTTGGCAGTGGCAAATCCATCAGGTTTTAGTATTGACTCAACGATGGGATGCACCATGGATGAGAAGGTGGAGTCGTGGCATCATCAGGTCAGTTGTGGACAGGAATGTGCAGAACATCTGAGTTGTGTTGAAAAAAGCACCTCAAGTAGAAGAGTGTATCCAGGAGGAAATGCTAAATTCTCAGATGGAATGTCTGCTTCTCCAGGAATGCAATGCTTGGATTTGGTTGGTACAGATGAGACTATACCAGAGCTTGAAGGGTTCATTATGCAAGCAGATAATGCACAGCCATGCATTACTGGAGATCAAATGGATTTGGAAGAGATGGATTTGGAAAAGATGGATTTGGAAGAGATAGATCTTCCAAGTAACTCAATAGATTATACATCCCTTGGTAAATCTAGGTTCATGCATTCTTCATTGTGCAATACTTTAACCCCATATAAGATTCATAACGTACCAGAGCCCTATCAGTCTTTACCTAATGGACTTCTGAAGGGCTTAGGTATAAGGACTTCCCTTCCTCTAAGCGATGGAAGTCCAAGGTCCCTTTCTGATTGCCAACCAAATTGCAAGGGTCAGTACACTTCTTCAGTTCAAACTCTTTGGGATCGAATTAATTCGAACCTGGGCAGTTCAGGAAAGCGTAGGAGTTTAAAACTAGACCTTCCCTGCATTACTGAAGAAAATGAAAATGTGGACGAGATTCCTGGTACATTCCAAAGGGGCATTGGTTCCGAAGGAATGGCTGGTTCAAATATTAGAGAACCCCTAGCTGAGATTGTAGATAATGCAAACCCCTCTACGTCAGTTTTACAAGATGATATATTAACAGGTGGACGTAAAGATATTTTAAGCACAGAGTTTAATCTCAGTGGGACTTGCGATAAGGTAAAAAATAAGCTTGACAAGCAGGATGGCAATAGGAAAAGATTCACAAGAAAGGGGAAGGAGAACCATAATATTTCTCTTGGAGCGAATGGTGTCAAGAGGACTGCTGGATCAGTTTGCAAAAGGCCGAAGTTATCTGGAAAAGATAGTATGAAACAAGGCCCCATTAACAATATTGTATCCAACGTTTCTTCCTTTATTCCATTAGTTCAACAAAAACAAGCGGCTGCTGTTGTTACAGGCAAGAGAGATGTCAAAGTGAAGGCCCTGGAGGCAGCTGAGGCTGCCAAGCGTATGGCTGAAAAAAAAGAGAACGAGCGCAAGATGAAGAAGGAGGTGTTGCGACTTGAGCGGGAAAGGTTGGAGCTGGAGCTGCAGAAGAAAAAGAAAGAGGAAGAACGAAAGAAAAAAGAGGAACAAATGGCAGCAAAGAAGCGGCAGATGGAAGATGAAGAAAAAAAGGAGAAAGAAAAAAAAAGGAAGCGAGTTAATGACAAGAAGAAGCAGCAGCAAGACCATATGAAGATACAGGCCAAGAAGGAAGAGATAAAAATACAACGCCGAGCTACGGATGAAGTCCAAGAAAATAAGAAAATTATAGATGAAAGAGAAAATCATAAGAATTTGTCGGTGCAAGACAAAAGAGAGTGCAATATGGAGAAAATTTCTGAAACCGAACCGTTGACCATGGTGGATTTGGCAAATGACAAAAAAGAATCGCATCCTGATTATTCGGAATCTGTGAATGATTGTGCTAATAATGGACAGGTAATGGACAATCTGATTAAAGCCACTGAAGATGATGACTTGATCATAAAAGACTCACTTCAAGAGCAGTCATACGATATCTCTCCATATAGAGGTTCAGATGATGAAGATGAAGACGAGGATGACCTTCCAAATAATAAGTTAATCCCTTCATGGGCAAGTAAGCATAGCCTGTCTCTGATTGTTTCTTCCCAGAAAATGGACCCAGAAACGATATTTCCTCCGCAAAGTTTTTGTAATATAGCAGAAGTTCTCCTGCCTCGGAAGCTTCAGTTACAGTAG
>Glyma20g24645.1 sequence type=predicted peptide gene model=Glyma20g24645 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAMEKHVVQIFERKKRIIDQSRQQCHLWEQHLFPKLRLNGIPPPPWLCNSSRHADPQGLSKDDLVSEVLISQPQYRVPFPSVCSNLDSVSYGVQYPIGLHNEGRALEKECNTGDGVSNFPDCPVNYAVCASSGPPELDSGAVSPPQNQIETRASDSHHDPAPSLAKLQRSKSRQKALELRNSAKAPRRLSGEDDNACVCAGTVTGSAPSTQEAEHAMESDVVKDFHSNIQSCSMEEMEACVYVTNYSGRMTRSKSSSQKFNSLNVASPSVAKEDGPLPNNLNESFEIVNQPCFANASCGINEANKREYQSKEAGKSVYDERLTESRSSSQARCNRELLKLDSTLGSGKGVDFCDHRQPITHAQLTDLSKASDCNNGSGRNTVKDGNSCLSKQESNIHGMIKLLRGSCPSPGHDLMMTGGFVRSIDKSVPLPQPSISQNSQDLVLSVVGTFNSQKDLDFSALKPNDRLSRSGSEKIEKVLKSSRYNFCEQSATCSESAGKKSWNVPPTKLDARRLSSSPEYSKLDTEIGRNSADKENVAALAASGKMRAVVTSANEGSLRPVSSSNLYGGPSNLESVYVEAAVDEKVLDVQENIPYGALPTDNVEHRSAAIVGKVEADFDGLVEKDPYCVIPKVGQNVSVLKPPTDFTMSVMPKQLDFDDVEETSMSGICSPDLKEGQQGVSPEEPLNSLEPVKLLEEETSSVCQSKCNSLGEMPSLQMQEVPIREEEPRMEYCASHLEEEDIARETLSAAPPNKEMPMVQNGFCILTSSLMNHSCPSQVAGENSSRSLSKEVMPTKFVSVNSTLENDESSAKLADSSEAVTGNDLHKSTDANVTNFTVAFPFSAPMADVNVGLARQGPNSITLCQDGDVLRKTLLSEGKITSFSPDFQIFRSSTKSFTYDVEHSCPQHKRRKIEIETERFRAASSNLLEKPCDSIDQRPASRNLSIEEDSREIALEVQNLPSDPEDDIGHQSISNIPTDEMQYNGECQTMEDSSLKVRKEEKCTLDGRDRSEDTLLLAVANPSGFSIDSTMGCTMDEKVESWHHQVSCGQECAEHLSCVEKSTSSRRVYPGGNAKFSDGMSASPGMQCLDLVGTDETIPELEGFIMQADNAQPCITGDQMDLEEMDLEKMDLEEIDLPSNSIDYTSLGKSRFMHSSLCNTLTPYKIHNVPEPYQSLPNGLLKGLGIRTSLPLSDGSPRSLSDCQPNCKGQYTSSVQTLWDRINSNLGSSGKRRSLKLDLPCITEENENVDEIPGTFQRGIGSEGMAGSNIREPLAEIVDNANPSTSVLQDDILTGGRKDILSTEFNLSGTCDKVKNKLDKQDGNRKRFTRKGKENHNISLGANGVKRTAGSVCKRPKLSGKDSMKQGPINNIVSNVSSFIPLVQQKQAAAVVTGKRDVKVKALEAAEAAKRMAEKKENERKMKKEVLRLERERLELELQKKKKEEERKKKEEQMAAKKRQMEDEEKKEKEKKRKRVNDKKKQQQDHMKIQAKKEEIKIQRRATDEVQENKKIIDERENHKNLSVQDKRECNMEKISETEPLTMVDLANDKKESHPDYSESVNDCANNGQVMDNLIKATEDDDLIIKDSLQEQSYDISPYRGSDDEDEDEDDLPNNKLIPSWASKHSLSLIVSSQKMDPETIFPPQSFCNIAEVLLPRKLQLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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