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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10600 | AT | Annotation by Michelle Graham. TAIR10: cationic amino acid transporter 7 | chr3:3313969-3317162 FORWARD LENGTH=584 | SoyBase | E_val: 0 | ISS |
| GO:0003333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1286 | KOG | Amino acid transporters | JGI | ISS | |
| PTHR11785 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PTHR11785:SF53 | Panther | TRYPTOPHAN PERMEASE | JGI | ISS | |
| PF00324 | PFAM | Amino acid permease | JGI | ISS | |
| UniRef100_G7ZYQ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: High affinity cationic amino acid transporter n=1 Tax=Medicago truncatula RepID=G7ZYQ0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NFE8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFE8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g24620 not represented in the dataset |
Glyma20g24620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g111900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24620.2 sequence type=transcript gene model=Glyma20g24620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAGCACCAGCAACAGCACCATGATTCATTGATTCCTCATTTCCTACTACTAGACTGAGCAAAACTCAAGCATGTGGCAGTTGCAGACATTATAAAGCCAACCTTTGGCTCCTCTCCCATTTCGCACTCACAAACTAAACCCATCTTTCCGCAATGGACTCCTCCTCCTCCTCCTCCTCCTCGTTTTCGAGCCTCCGCGCGTACCTCAGCGCACTCTCCCACACCCCCACGCGCCTCGCCCTACGCGCCCTCTCCGTCTCTACATCCTACGATGAGATGAGCCAGGTCCGCGCCCGCTCCGGCACCAGCATGCGCAAGACCCTCCGATGGTTCGACCTCGTCTCCCTCGGCATCGGCGGAATGGTCGGCGCCGGCGTCTTCGTCACCACCGGCCACGCCACCCTCTACGCCGGCCCCGCCGTCCTCCTCTCCTACGCCATTGCCGGCTTCTGCGCCCTCCTCTCCGCCTTCTGCTACACCGAGTTCGCCGTCGACATGCCCGTCGCCGGCGGCGCCTTCAGCTACCTCCGCGTCACCTTTGGTGAATTTGCAGCCTTTCTGACCGGCGCAAACCTTGTGGCGGACTACGTGCTTTCCAATGCCGCCGTTGCCAGAGGCTTGACGGCGTACCTAGGCACCACAATCGGAATCTCCTCAGCCAAATGGCGCCTCACGGTGCCGTCTCTTCCCAAAGGCTTCAACGAAATAGACTTCGTCGCTGTCGCCGTCGTTTTGCTCATCACTCTCGTCATCTGCTACAGCACGAGGGAGAGTTCTGTGGTGAACATGATTCTGACGGCGCTGCACATATTGTTCATAGCGTTTGTGATAATGATGGGGTTCTGGAGAGGGAATTGGAAGAACTTCACCGAACCCGCCAACCCACATAATCCCTCCGGTTTCTTCCCGCACGGTGCAGCGGGCGTCTTTAAAGGTGCTGCCTTGGTTTACTTGAGTTACATTGGTTATGATGCGGTTTCAACCATGGCAGAAGAAGTGCGGGACCCAGTCAAGGATATTCCGGTCGGCGTGTCGGGTTCTGTCGTTGTCGTCACGGTTCTCTATTGTCTTATGGCAGCATCCATGACCAAACTTCTCCCTTACGATATCAATGCGGAAGCACCGTTTTCGGCGGCGTTCAGTGGAAGATCGGACGGTTGGGGATGGGTGTCTCGAGTGATAGGAGTGGGGGCCAGTTTCGGGATATTGACGTCACTGTTGGTGGCGATGCTGGGTCAGGCTCGTTATATGTGCGTCATCGGCCGCTCCAATGTGGTCCCCTCTTGGTTCGCTAGGGTCCACCCCAAAACCTCTACCCCTGTCAACGCCTCCGCCTTTCTTGGTATCTTCACAGCTGCAATAGCTCTTTTCACTGATCTTGATGTCCTCTTAAATCTGGTGTGTATTGGCACCCTCTTTGTCTTTTACATGGTGGCAAATGCCGTGATCTATAGACGTTATGTGGCTACAGGGACAACGAATCCATGGCCTACATTGTCCTTCCTCTGCTCATTTTCCATAACCGCAATCATGTTCACCCTTATTTGGAAATTTGTACCCACAGGAGGGGCGAAGGCAGGGATGCTCAGTGTCAGTGGTGTTATTGCGATTGCAATATTACAACTTTTCCATTGCATGGTCCCTCAAGTTCGAAAGCCAGAATTCTGGGGTGTCCCATTCATGCCGTGGATACCCTCTATATCAATCTTTCTGAATGTGTTTCTGTTGGGATCACTGGATGGGCCATCCTATGTTCGATTTGGATTCTTTTCGGCTGTTGCGGTGCTTTTCTATGTCTTCTACAGTGTTCATGCCAGCTTTGATGCTGAAGGAGATGATTCTTTGACTGCAAATAAGAATGGGGAAATCCACGTGGAATCAAAAGAAATTGAAGACCAAAGTTTCGAAGTGTAGATAGTCCTTTATTTGTGTTCTTTTTCTATAAAAAAAAAAAATTAAGTTAGGATCACCTCAACCTTTTTGGATGGTTGAGGATCACTTGGAACAAGGGAACAAGGATGTGGGGGAGGGAGAATTATGTGGATTACATATTAAATTAGAATAGGTTGCAACTTTAGTAGAAGTGGCGAATTGTATAGTTAGACAGGCTTAGGTTGTGATCTCTTTTGTAAATTCTCTGGCTTATATCCCCAAATCAAAAATGAAATTATAAAAAAAAACTCAGTTTATCTACCCTATCAACTCTGGGACTTCTAACGCCTAAACACAACTTTGTGATAC
>Glyma20g24620.1 sequence type=CDS gene model=Glyma20g24620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTCCTCCTCCTCCTCCTCCTCCTCGTTTTCGAGCCTCCGCGCGTACCTCAGCGCACTCTCCCACACCCCCACGCGCCTCGCCCTACGCGCCCTCTCCGTCTCTACATCCTACGATGAGATGAGCCAGGTCCGCGCCCGCTCCGGCACCAGCATGCGCAAGACCCTCCGATGGTTCGACCTCGTCTCCCTCGGCATCGGCGGAATGGTCGGCGCCGGCGTCTTCGTCACCACCGGCCACGCCACCCTCTACGCCGGCCCCGCCGTCCTCCTCTCCTACGCCATTGCCGGCTTCTGCGCCCTCCTCTCCGCCTTCTGCTACACCGAGTTCGCCGTCGACATGCCCGTCGCCGGCGGCGCCTTCAGCTACCTCCGCGTCACCTTTGGTGAATTTGCAGCCTTTCTGACCGGCGCAAACCTTGTGGCGGACTACGTGCTTTCCAATGCCGCCGTTGCCAGAGGCTTGACGGCGTACCTAGGCACCACAATCGGAATCTCCTCAGCCAAATGGCGCCTCACGGTGCCGTCTCTTCCCAAAGGCTTCAACGAAATAGACTTCGTCGCTGTCGCCGTCGTTTTGCTCATCACTCTCGTCATCTGCTACAGCACGAGGGAGAGTTCTGTGGTGAACATGATTCTGACGGCGCTGCACATATTGTTCATAGCGTTTGTGATAATGATGGGGTTCTGGAGAGGGAATTGGAAGAACTTCACCGAACCCGCCAACCCACATAATCCCTCCGGTTTCTTCCCGCACGGTGCAGCGGGCGTCTTTAAAGGTGCTGCCTTGGTTTACTTGAGTTACATTGGTTATGATGCGGTTTCAACCATGGCAGAAGAAGTGCGGGACCCAGTCAAGGATATTCCGGTCGGCGTGTCGGGTTCTGTCGTTGTCGTCACGGTTCTCTATTGTCTTATGGCAGCATCCATGACCAAACTTCTCCCTTACGATGTGATCAATGCGGAAGCACCGTTTTCGGCGGCGTTCAGTGGAAGATCGGACGGTTGGGGATGGGTGTCTCGAGTGATAGGAGTGGGGGCCAGTTTCGGGATATTGACGTCACTGTTGGTGGCGATGCTGGGTCAGGCTCGTTATATGTGCGTCATCGGCCGCTCCAATGTGGTCCCCTCTTGGTTCGCTAGGGTCCACCCCAAAACCTCTACCCCTGTCAACGCCTCCGCCTTTCTTGGTATCTTCACAGCTGCAATAGCTCTTTTCACTGATCTTGATGTCCTCTTAAATCTGGTGTGTATTGGCACCCTCTTTGTCTTTTACATGGTGGCAAATGCCGTGATCTATAGACGTTATGTGGCTACAGGGACAACGAATCCATGGCCTACATTGTCCTTCCTCTGCTCATTTTCCATAACCGCAATCATGTTCACCCTTATTTGGAAATTTGTACCCACAGGAGGGGCGAAGGCAGGGATGCTCAGTGTCAGTGGTGTTATTGCGATTGCAATATTACAACTTTTCCATTGCATGGTCCCTCAAGTTCGAAAGCCAGAATTCTGGGGTGTCCCATTCATGCCGTGGATACCCTCTATATCAATCTTTCTGAATGTGTTTCTGTTGGGATCACTGGATGGGCCATCCTATGTTCGATTTGGATTCTTTTCGGCTGTTGCGGTGCTTTTCTATGTCTTCTACAGTGTTCATGCCAGCTTTGATGCTGAAGGAGATGATTCTTTGACTGCAAATAAGAATGGGGAAATCCACGTGGAATCAAAAGAAATTGAAGACCAAAGTTTCGAAGTGTAG >Glyma20g24620.2 sequence type=CDS gene model=Glyma20g24620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTCCTCCTCCTCCTCCTCCTCCTCGTTTTCGAGCCTCCGCGCGTACCTCAGCGCACTCTCCCACACCCCCACGCGCCTCGCCCTACGCGCCCTCTCCGTCTCTACATCCTACGATGAGATGAGCCAGGTCCGCGCCCGCTCCGGCACCAGCATGCGCAAGACCCTCCGATGGTTCGACCTCGTCTCCCTCGGCATCGGCGGAATGGTCGGCGCCGGCGTCTTCGTCACCACCGGCCACGCCACCCTCTACGCCGGCCCCGCCGTCCTCCTCTCCTACGCCATTGCCGGCTTCTGCGCCCTCCTCTCCGCCTTCTGCTACACCGAGTTCGCCGTCGACATGCCCGTCGCCGGCGGCGCCTTCAGCTACCTCCGCGTCACCTTTGGTGAATTTGCAGCCTTTCTGACCGGCGCAAACCTTGTGGCGGACTACGTGCTTTCCAATGCCGCCGTTGCCAGAGGCTTGACGGCGTACCTAGGCACCACAATCGGAATCTCCTCAGCCAAATGGCGCCTCACGGTGCCGTCTCTTCCCAAAGGCTTCAACGAAATAGACTTCGTCGCTGTCGCCGTCGTTTTGCTCATCACTCTCGTCATCTGCTACAGCACGAGGGAGAGTTCTGTGGTGAACATGATTCTGACGGCGCTGCACATATTGTTCATAGCGTTTGTGATAATGATGGGGTTCTGGAGAGGGAATTGGAAGAACTTCACCGAACCCGCCAACCCACATAATCCCTCCGGTTTCTTCCCGCACGGTGCAGCGGGCGTCTTTAAAGGTGCTGCCTTGGTTTACTTGAGTTACATTGGTTATGATGCGGTTTCAACCATGGCAGAAGAAGTGCGGGACCCAGTCAAGGATATTCCGGTCGGCGTGTCGGGTTCTGTCGTTGTCGTCACGGTTCTCTATTGTCTTATGGCAGCATCCATGACCAAACTTCTCCCTTACGATATCAATGCGGAAGCACCGTTTTCGGCGGCGTTCAGTGGAAGATCGGACGGTTGGGGATGGGTGTCTCGAGTGATAGGAGTGGGGGCCAGTTTCGGGATATTGACGTCACTGTTGGTGGCGATGCTGGGTCAGGCTCGTTATATGTGCGTCATCGGCCGCTCCAATGTGGTCCCCTCTTGGTTCGCTAGGGTCCACCCCAAAACCTCTACCCCTGTCAACGCCTCCGCCTTTCTTGGTATCTTCACAGCTGCAATAGCTCTTTTCACTGATCTTGATGTCCTCTTAAATCTGGTGTGTATTGGCACCCTCTTTGTCTTTTACATGGTGGCAAATGCCGTGATCTATAGACGTTATGTGGCTACAGGGACAACGAATCCATGGCCTACATTGTCCTTCCTCTGCTCATTTTCCATAACCGCAATCATGTTCACCCTTATTTGGAAATTTGTACCCACAGGAGGGGCGAAGGCAGGGATGCTCAGTGTCAGTGGTGTTATTGCGATTGCAATATTACAACTTTTCCATTGCATGGTCCCTCAAGTTCGAAAGCCAGAATTCTGGGGTGTCCCATTCATGCCGTGGATACCCTCTATATCAATCTTTCTGAATGTGTTTCTGTTGGGATCACTGGATGGGCCATCCTATGTTCGATTTGGATTCTTTTCGGCTGTTGCGGTGCTTTTCTATGTCTTCTACAGTGTTCATGCCAGCTTTGATGCTGAAGGAGATGATTCTTTGACTGCAAATAAGAATGGGGAAATCCACGTGGAATCAAAAGAAATTGAAGACCAAAGTTTCGAAGTGTAG
>Glyma20g24620.1 sequence type=predicted peptide gene model=Glyma20g24620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSSSSSSSSFSSLRAYLSALSHTPTRLALRALSVSTSYDEMSQVRARSGTSMRKTLRWFDLVSLGIGGMVGAGVFVTTGHATLYAGPAVLLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGANLVADYVLSNAAVARGLTAYLGTTIGISSAKWRLTVPSLPKGFNEIDFVAVAVVLLITLVICYSTRESSVVNMILTALHILFIAFVIMMGFWRGNWKNFTEPANPHNPSGFFPHGAAGVFKGAALVYLSYIGYDAVSTMAEEVRDPVKDIPVGVSGSVVVVTVLYCLMAASMTKLLPYDVINAEAPFSAAFSGRSDGWGWVSRVIGVGASFGILTSLLVAMLGQARYMCVIGRSNVVPSWFARVHPKTSTPVNASAFLGIFTAAIALFTDLDVLLNLVCIGTLFVFYMVANAVIYRRYVATGTTNPWPTLSFLCSFSITAIMFTLIWKFVPTGGAKAGMLSVSGVIAIAILQLFHCMVPQVRKPEFWGVPFMPWIPSISIFLNVFLLGSLDGPSYVRFGFFSAVAVLFYVFYSVHASFDAEGDDSLTANKNGEIHVESKEIEDQSFEV* >Glyma20g24620.2 sequence type=predicted peptide gene model=Glyma20g24620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSSSSSSSSFSSLRAYLSALSHTPTRLALRALSVSTSYDEMSQVRARSGTSMRKTLRWFDLVSLGIGGMVGAGVFVTTGHATLYAGPAVLLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGEFAAFLTGANLVADYVLSNAAVARGLTAYLGTTIGISSAKWRLTVPSLPKGFNEIDFVAVAVVLLITLVICYSTRESSVVNMILTALHILFIAFVIMMGFWRGNWKNFTEPANPHNPSGFFPHGAAGVFKGAALVYLSYIGYDAVSTMAEEVRDPVKDIPVGVSGSVVVVTVLYCLMAASMTKLLPYDINAEAPFSAAFSGRSDGWGWVSRVIGVGASFGILTSLLVAMLGQARYMCVIGRSNVVPSWFARVHPKTSTPVNASAFLGIFTAAIALFTDLDVLLNLVCIGTLFVFYMVANAVIYRRYVATGTTNPWPTLSFLCSFSITAIMFTLIWKFVPTGGAKAGMLSVSGVIAIAILQLFHCMVPQVRKPEFWGVPFMPWIPSISIFLNVFLLGSLDGPSYVRFGFFSAVAVLFYVFYSVHASFDAEGDDSLTANKNGEIHVESKEIEDQSFEV*
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