Glyma20g24450 - SoyBase

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Report for Sequence Feature Glyma20g24450

Feature Type:	gene_model
Chromosome:	Gm20
Start:	34121703
stop:	34129566
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g24450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04740	AT	Annotation by Michelle Graham. TAIR10: ACT domain-containing protein \| chr5:1368713-1371391 REVERSE LENGTH=301	SoyBase	E_val: 8.00E-128	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019408	GO-bp	Annotation by Michelle Graham. GO Biological Process: dolichol biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
PF01842	PFAM	ACT domain	JGI		ISS
UniRef100_I1NFC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NFC9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LZ23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ACT domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9LZ23_ARATH	SoyBase	E_val: 4.00E-125	ISS

Expression Patterns of Glyma20g24450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g24450 not represented in the dataset	Glyma20g24450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g24450

Paralog	Evidence	Comments
Glyma10g42580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g24450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g110400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g24450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g24450

Limit To All Plant Sequences

>Glyma20g24450.2   sequence type=transcript   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGCACTTGGTTTGTTATTTTCATTACATCACGTCACGTAACAATACTAATATACACGCCCGCACCTCTCTCACAAGTCTCACCAACTTCCACTCTCATCAATGACTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTTCACGGTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTTTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACATTCTATATGCTTCTGCTTATGATTTGAATGCAGTTGGTTCAGCTTCACTGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGTATCTTCCTCTTTGTCTCTGTCCGCCTCTGCTTGATTCATTTACCCTAAGTAACTTTACCCCCCTTTCTCTCAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGTCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGGACGCCAGAGACAGATATTGATAGTTACTGAAGGAACCACCCTTGTAAAATAAGCCAATGCAATGGTTCTTTCCTATACCAAATCGCCAGTTACTGCTACCACATTATGGAATGAGTTATGAGTACCTGTAACTAACTATGGAATGAATACGTGTTGCCTGTGGTATGGAATCTATGAATACCTGAAACTCACTGAACGTCCGTTAAATCTGATATGAAAGCTAAAAAAATTGAAAATGAATTTTGCCTCATTTCCTAAATGGTTTATGAGAGTATAACTGGGAGGTGAAATTTCAAATTTGATAAAAATGAAAAGTAGAATATCATATAAGTGAATATAAGACCTATAAATATGAGATTTAAAGTTTT

>Glyma20g24450.4   sequence type=transcript   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGCACTTGGTTTGTTATTTTCATTACATCACGTCACGTAACAATACTAATATACACGCCCGCACCTCTCTCACAAGTCTCACCAACTTCCACTCTCATCAATGACTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTTCACGGTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTTTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACATTCTATATGCTTCTGCTTATGATTTGAATGCAGTTGGTTCAGCTTCACTGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGTCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGGACGCCAGAGACAGATATTGATAGTTACTGAAGGAACCACCCTTGTAAAATAAGCCAATGCAATGGTTCTTTCCTATACCAAATCGCCAGTTACTGCTACCACATTATGGAATGAGTTATGAGTACCTGTAACTAACTATGGAATGAATACGTGTTGCCTGTGGTATGGAATCTATGAATACCTGAAACTCACTGAACGTCCGTTAAATCTGATATGAAAGCTAAAAAAATTGAAAATGAATTTTGCCTCATTTCCTAAATGGTTTATGAGAGTATAACTGGGAGGTGAAATTTCAAATTTGATAAAAATGAAAAGTAGAATATCATATAAGTGAATATAAGACCTATAAATATGAGATTTAAAGTTTT

>Glyma20g24450.5   sequence type=transcript   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATTTTGTATGCCGTGCTTTTATGTACATATATTTTTGTAATGTTTGAATGGTTAATTCTTGCTGTGCAGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGTCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGGACGCCAGAGACAGATATTGATAGTTACTGAAGGAACCACCCTTGTAAAATAAGCCAATGCAATGGTTCTTTCCTATACCAAATCGCCAGTTACTGCTACCACATTATGGAATGAGTTATGAGTACCTGTAACTAACTATGGAATGAATACGTGTTGCCTGTGGTATGGAATCTATGAATACCTGAAACTCACTGAACGTCCGTTAAATCTGATATGAAAGCTAAAAAAATTGAAAATGAATTTTGCCTCATTTCCTAAATGGTTTATGAGAGTATAACTGGGAGGTGAAATTTCAAATTTGATAAAAATGAAAAGTAGAATATCATATAAGTGAATATAAGACCTATAAATATGAGATTTAAAGTTTT

Coding sequences of Glyma20g24450

Limit To All Plant Sequences

>Glyma20g24450.1   sequence type=CDS   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTTCACGGTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTTTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACATTCTATATGCTTCTGCTTATGATTTGAATGCAGTTGGTTCAGCTTCACTGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGTCTCAGGTAACCCTCGTGTTCAAAGAAATGGAGAAATTTTTCCAATATGCTGAGGAAGAACTAATTTAG

>Glyma20g24450.2   sequence type=CDS   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTTCACGGTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTTTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACATTCTATATGCTTCTGCTTATGATTTGAATGCAGTTGGTTCAGCTTCACTGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGTATCTTCCTCTTTGTCTCTGTCCGCCTCTGCTTGA

>Glyma20g24450.4   sequence type=CDS   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTTCACGGTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTTTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACATTCTATATGCTTCTGCTTATGATTTGAATGCAGTTGGTTCAGCTTCACTGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGTCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGGACGCCAGAGACAGATATTGATAGTTACTGA

>Glyma20g24450.5   sequence type=CDS   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGAATGGTTAATTCTTGCTGTGCAGCAATCTGGTGACAATCCTGATAGTCTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGAATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGACGCAAAGTTGAAGATCCTGATATGTTAGAGAGGATTCGGCTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAGAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGGCCCAAGAGGAGCTTGCTGTATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAGTCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGTCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGGACGCCAGAGACAGATATTGATAGTTACTGA

Predicted protein sequences of Glyma20g24450

Limit To All Plant Sequences

>Glyma20g24450.1   sequence type=predicted peptide   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLTNAFLAPSFAVHGGRVSDPRSIPLFSLPSDAFFRSPTSLSRDKNILYASAYDLNAVGSASLQSGDNPDSLPMPIVLIDQESDSEATIVQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMSQVTLVFKEMEKFFQYAEEELI*

>Glyma20g24450.2   sequence type=predicted peptide   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLTNAFLAPSFAVHGGRVSDPRSIPLFSLPSDAFFRSPTSLSRDKNILYASAYDLNAVGSASLQSGDNPDSLPMPIVLIDQESDSEATIVQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEVSSSLSLSASA*

>Glyma20g24450.4   sequence type=predicted peptide   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLTNAFLAPSFAVHGGRVSDPRSIPLFSLPSDAFFRSPTSLSRDKNILYASAYDLNAVGSASLQSGDNPDSLPMPIVLIDQESDSEATIVQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMSQVLVNCLRYYLRTPETDIDSY*

>Glyma20g24450.5   sequence type=predicted peptide   gene model=Glyma20g24450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFEWLILAVQQSGDNPDSLPMPIVLIDQESDSEATIVQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMSQVLVNCLRYYLRTPETDIDSY*

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