Glyma20g24360 - SoyBase

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Report for Sequence Feature Glyma20g24360

Feature Type:	gene_model
Chromosome:	Gm20
Start:	34038098
stop:	34039368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g24360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34135	AT	Annotation by Michelle Graham. TAIR10: UDP-glucosyltransferase 73B2 \| chr4:16345476-16347016 REVERSE LENGTH=483	SoyBase	E_val: 7.00E-48	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0051555	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0047893	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavonol 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080044	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 7-O-glucosyltransferase activity	SoyBase	N/A	ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_A6XNC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: (Iso)flavonoid glycosyltransferase n=2 Tax=Medicago truncatula RepID=A6XNC7_MEDTR	SoyBase	E_val: 6.00E-123	ISS
UniRef100_I1NFB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NFB4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g24360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g24360

Paralog	Evidence	Comments
Glyma10g42680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g24360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g109300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g24360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g24360

Limit To All Plant Sequences

>Glyma20g24360.2   sequence type=CDS   gene model=Glyma20g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGGCGTGGGTGTCACGGTAATTAGCATATCGGCAAACGCCGCCATTTTCCAAAGCTCCATCGATAGCGATTCTACTCGCGGTCGATCCATTCGAACCCACCTTGTGAAGTTTCCACCCCTGCCTGGTTTGCCAGAAGGGACCAAACTCATGGAGGCACTGTTCATTCTCCAAGGGCAATTCCAACAACTCTTTCATGACATGCAACCAGATTTCATAGTCACTGACATGTTCTACCCTTGGACTGCTGATGCTGCCGCTGATTTGGGAATTCCTAGGTTGGTTTATGTCGGTGGTGCAAGTTATGTTGCTCACTGGGCAATGAACTGCGTCGAACAGTTTGCACTGCAGACAAAGGTAGATTCAGATGGCGAGAGATCGCTGTTCAAAAGCTTTTATGAGTTTGAGGGAGCTTACGAGGAGCATTACAAGAAAGTCATGTGTACCAAGAGTTGGAGCATAGGACCGGTTTCGTTATGGGTGAACCAAGATGATTCAGATAAGGCTTGTAGGGGACATGCCAAAGAAGAAGGCAAAGGAAAAGAAGAAGGGTTGCTTACATGGCTTGATTCTAAGAAAAGAGGAATCTGTTCTCTACATTCTGGCCATGATTTCATCTGGGTGGTTAGGAAAATTGATGAAGGGGCTACTAGGGTTTTTCTGGAAGAATTTGAGAAGAGAGTGCAAGAAAGCAGCAAGGGTTACCTAATATGGGGTTGGGCACCGCAACTTGTTATACTAGAGCATCCTGTCACTGGAGGTGTGGTGACTCACTGTGGGATAAACACTGTGTTTGAAAGTGTCATCGCAAGTTTGCCAATGGTGACTTGGCCTATTTATGCAGACCAGTTTTTCAATGAGAAGTTGCTGGGAGGACATAGGAAAGGCTATTGCTTTGTTGATGGGTGGAGGGAAGAATATGTAGAAATTCGGAGAAGAGTCAAAACTCTAAGTGATGCTACAAAGAAAACAATTCAGGTTGGTGGCTCTCTTCTCACAACAATTTGA

Predicted protein sequences of Glyma20g24360

Limit To All Plant Sequences

>Glyma20g24360.2   sequence type=predicted peptide   gene model=Glyma20g24360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHGVGVTVISISANAAIFQSSIDSDSTRGRSIRTHLVKFPPLPGLPEGTKLMEALFILQGQFQQLFHDMQPDFIVTDMFYPWTADAAADLGIPRLVYVGGASYVAHWAMNCVEQFALQTKVDSDGERSLFKSFYEFEGAYEEHYKKVMCTKSWSIGPVSLWVNQDDSDKACRGHAKEEGKGKEEGLLTWLDSKKRGICSLHSGHDFIWVVRKIDEGATRVFLEEFEKRVQESSKGYLIWGWAPQLVILEHPVTGGVVTHCGINTVFESVIASLPMVTWPIYADQFFNEKLLGGHRKGYCFVDGWREEYVEIRRRVKTLSDATKKTIQVGGSLLTTI*

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