SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35110 | AT | Annotation by Michelle Graham. TAIR10: Arabidopsis phospholipase-like protein (PEARLI 4) family | chr4:16712660-16714225 REVERSE LENGTH=401 | SoyBase | E_val: 9.00E-46 | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21704 | Panther | NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED | JGI | ISS | |
| PTHR21704:SF11 | Panther | UNKNOWN PROTEIN | JGI | ISS | |
| PF05278 | PFAM | Arabidopsis phospholipase-like protein (PEARLI 4) | JGI | ISS | |
| UniRef100_A8MQE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase-like (PEARLI 4) family protein n=2 Tax=Arabidopsis thaliana RepID=A8MQE1_ARATH | SoyBase | E_val: 4.00E-43 | ISS |
| UniRef100_I1NF97 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NF97_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g24180 not represented in the dataset |
Glyma20g24180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g107600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24180.2 sequence type=transcript gene model=Glyma20g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTGACAAAATTTGCATTTGCTAAAAACTTTGAAATGCTTCCTTCCTTACCCTGTCTGCTAGTGCCAGCATTCAAAAAGTGGTTTCCGATTTCCTTGTTTCATTCATTTCTTTTTTTAATATTTCCCTGCTCCGCTGGTCAAAGAGCAAAATTCTAATCGTCACCCCCGCATGGTCAAAAAAACAAACGCTTCCATTTTTTCATTCACTCTTTGCTTCCTTCCTTGCTCAAAAAAAAAAGAGAGAATAGTACTCCAATCAACATACCCCACACTGTTTGATTAGGAATTCGGGTTGCACACCTACTCCTTCTACTTTCCAACACCGCTGTCTCTGTCTTTCTAGTCACAGTTGGGTGGGTTGGTACCAAAGGTGAGGCAGAGGAGACTCAGAAAGAGATGGCTGAACACGGAAGAGTTATGGCAAACTGTGTATATGCTCCCAATCCCTACCATGAATGCACGGAGGCTTGCGTGCAAAGAATCAAGGAAGCCAAGCCTGGCAAGCCATCTAAAACTAAAAAGGTTTTCAAAGATTATCGCAGAAGTGTTACAGATGGTGAACTTGGCAAAAAGATGAAAGAAGAAAAACGCAGGCCCTCAGGTTGCCCTAAAGCGTCTAATCCTTACCATGTCTGTGATGAATATTGCCAGAAGGCTGATTCAGGTACCATGTCTTTAAACTTTGACAGGAGGAAGAAGGTTGGTTCAAAGCCAGAACTCCCCGTTCTTGACAGTGTTCCACCCTCAAAAATTGGGGCTATTTATCTCTCTGATGCTTCATCGCCATTATCAAATTATTCTGAAAAGACAAAGGAGGAGTCAAAAAGCAATGAGCTAATACCAGTTTCTGGAGAAATACATGTCCTAGATGTCATGCCTACCAATCACAAGGTCCAATCAAAGCACAATGGGGACAAAAATGCTTCACCAAAAGTTGTTCCAATCACCTCTGTTGATGACACGGGATGTCTTACTAAACCAGATGGTGGATCCATGAATTTTTGTTTGTCTGGTCTCCATGATAATGAAGACAGTGATGGAGGGGAGACTGAGTCTGTGGTTTCTGAGTCGCGTGTCCCGGTTGGAAAATACCACGTGAAGGAAAGCTTTGCTCCCATCCTGAGATCCATCTTTGAAAAGTATGGGGACATAGGAGCAAGCTGCCACTTGGAATCAGTTGTTATGCGGTCATATTATGTCGAGTGTGTGTGCTTTGTGGTCCAAGAGCTACAATCTACCCCAATAATGCAATTGGCAAAGTCTAAAATCATGGAATTGATGGCTATTCTTAAGGATGTAGAATCTGCTCAGCTTCGCGTGGCCTGGTTGCGGAACATAGTTGATGAAATTGCTGAAAACATTGAACTCATTGATGAGCACTGCATGGCGGAGATGGCAAAGGCTAACTCTGATCGTGAAATGGAAACATTGAACAAAGAGCTGGAATCAAATCTGGAAAGTTTGGCTCAGAAAGAACAAGAGGTAACTGATATCAAAACAAGAATTGAAGAGATCAGAGAGCATTTAAGCGAGCTTGAGCTGAAGTCTTCTGATTTGGCCAAGAACATCTTGTCAATCAAGTCCAAGGTTGATAATTTAGACAGCAAATCCTTGCTAGATGAACTAGTTTAATGAAATTGTTTTTGTCTTTGAATTTCGTCCTCAGAATTATGGTAATGCTTAAATTGTAGAATATGGTACTGAATAAACGCATGAGCTATATTTTTAAGCTAGGCAATGGTATGAATACATATTGCACATGCACATTTTTAAGTTTACTTCAATTTATTATTATTTTTTATTGATATCTAAATATCCCAACAACTTTGGGTTGAAATTGCAGTCATTACTGAGAATATTTGTTTGTATGCTTACGCGACACTTTGTTTGATCATCCAGGATATTATTTGCCT
>Glyma20g24180.1 sequence type=CDS gene model=Glyma20g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGTCTCTTTCTGCTTCACAGTTGGGTGGGTTGGTACCAAAGGTGAGGCAGAGGAGACTCAGAAAGAGATGGCTGAACACGGAAGAGTTATGGCAAACTGTGTATATGCTCCCAATCCCTACCATGAATGCACGGAGGCTTGCGTGCAAAGAATCAAGGAAGCCAAGCCTGGCAAGCCATCTAAAACTAAAAAGGTTTTCAAAGATTATCGCAGAAGTGTTACAGATGGTGAACTTGGCAAAAAGATGAAAGAAGAAAAACGCAGGCCCTCAGGTTGCCCTAAAGCGTCTAATCCTTACCATGTCTGTGATGAATATTGCCAGAAGGCTGATTCAGGTACCATGTCTTTAAACTTTGACAGGAGGAAGAAGGTTGGTTCAAAGCCAGAACTCCCCGTTCTTGACAGTGTTCCACCCTCAAAAATTGGGGCTATTTATCTCTCTGATGCTTCATCGCCATTATCAAATTATTCTGAAAAGACAAAGGAGGAGTCAAAAAGCAATGAGCTAATACCAGTTTCTGGAGAAATACATGTCCTAGATGTCATGCCTACCAATCACAAGGTCCAATCAAAGCACAATGGGGACAAAAATGCTTCACCAAAAGTTGTTCCAATCACCTCTGTTGATGACACGGGATGTCTTACTAAACCAGATGGTGGATCCATGAATTTTTGTTTGTCTGGTCTCCATGATAATGAAGACAGTGATGGAGGGGAGACTGAGTCTGTGGTTTCTGAGTCGCGTGTCCCGGTTGGAAAATACCACGTGAAGGAAAGCTTTGCTCCCATCCTGAGATCCATCTTTGAAAAGTATGGGGACATAGGAGCAAGCTGCCACTTGGAATCAGTTGTTATGCGGTCATATTATGTCGAGTGTGTGTGCTTTGTGGTCCAAGAGCTACAATCTACCCCAATAATGCAATTGGCAAAGTCTAAAATCATGGAATTGATGGCTATTCTTAAGGATGTAGAATCTGCTCAGCTTCGCGTGGCCTGGTTGCGGAACATAGTTGATGAAATTGCTGAAAACATTGAACTCATTGATGAGCACTGCATGGCGGAGATGGCAAAGGCTAACTCTGATCGTGAAATGGAAACATTGAACAAAGAGCTGGAATCAAATCTGGAAAGTTTGGCTCAGAAAGAACAAGAGGTAACTGATATCAAAACAAGAATTGAAGAGATCAGAGAGCATTTAAGCGAGCTTGAGCTGAAGTCTTCTGATTTGGCCAAGAACATCTTGTCAATCAAGTCCAAGGTTGATAATTTAGACAGCAAATCCTTGCTAGATGAACTAGTTTAA >Glyma20g24180.2 sequence type=CDS gene model=Glyma20g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAACACGGAAGAGTTATGGCAAACTGTGTATATGCTCCCAATCCCTACCATGAATGCACGGAGGCTTGCGTGCAAAGAATCAAGGAAGCCAAGCCTGGCAAGCCATCTAAAACTAAAAAGGTTTTCAAAGATTATCGCAGAAGTGTTACAGATGGTGAACTTGGCAAAAAGATGAAAGAAGAAAAACGCAGGCCCTCAGGTTGCCCTAAAGCGTCTAATCCTTACCATGTCTGTGATGAATATTGCCAGAAGGCTGATTCAGGTACCATGTCTTTAAACTTTGACAGGAGGAAGAAGGTTGGTTCAAAGCCAGAACTCCCCGTTCTTGACAGTGTTCCACCCTCAAAAATTGGGGCTATTTATCTCTCTGATGCTTCATCGCCATTATCAAATTATTCTGAAAAGACAAAGGAGGAGTCAAAAAGCAATGAGCTAATACCAGTTTCTGGAGAAATACATGTCCTAGATGTCATGCCTACCAATCACAAGGTCCAATCAAAGCACAATGGGGACAAAAATGCTTCACCAAAAGTTGTTCCAATCACCTCTGTTGATGACACGGGATGTCTTACTAAACCAGATGGTGGATCCATGAATTTTTGTTTGTCTGGTCTCCATGATAATGAAGACAGTGATGGAGGGGAGACTGAGTCTGTGGTTTCTGAGTCGCGTGTCCCGGTTGGAAAATACCACGTGAAGGAAAGCTTTGCTCCCATCCTGAGATCCATCTTTGAAAAGTATGGGGACATAGGAGCAAGCTGCCACTTGGAATCAGTTGTTATGCGGTCATATTATGTCGAGTGTGTGTGCTTTGTGGTCCAAGAGCTACAATCTACCCCAATAATGCAATTGGCAAAGTCTAAAATCATGGAATTGATGGCTATTCTTAAGGATGTAGAATCTGCTCAGCTTCGCGTGGCCTGGTTGCGGAACATAGTTGATGAAATTGCTGAAAACATTGAACTCATTGATGAGCACTGCATGGCGGAGATGGCAAAGGCTAACTCTGATCGTGAAATGGAAACATTGAACAAAGAGCTGGAATCAAATCTGGAAAGTTTGGCTCAGAAAGAACAAGAGGTAACTGATATCAAAACAAGAATTGAAGAGATCAGAGAGCATTTAAGCGAGCTTGAGCTGAAGTCTTCTGATTTGGCCAAGAACATCTTGTCAATCAAGTCCAAGGTTGATAATTTAGACAGCAAATCCTTGCTAGATGAACTAGTTTAA
>Glyma20g24180.1 sequence type=predicted peptide gene model=Glyma20g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVSFCFTVGWVGTKGEAEETQKEMAEHGRVMANCVYAPNPYHECTEACVQRIKEAKPGKPSKTKKVFKDYRRSVTDGELGKKMKEEKRRPSGCPKASNPYHVCDEYCQKADSGTMSLNFDRRKKVGSKPELPVLDSVPPSKIGAIYLSDASSPLSNYSEKTKEESKSNELIPVSGEIHVLDVMPTNHKVQSKHNGDKNASPKVVPITSVDDTGCLTKPDGGSMNFCLSGLHDNEDSDGGETESVVSESRVPVGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLAKSKIMELMAILKDVESAQLRVAWLRNIVDEIAENIELIDEHCMAEMAKANSDREMETLNKELESNLESLAQKEQEVTDIKTRIEEIREHLSELELKSSDLAKNILSIKSKVDNLDSKSLLDELV* >Glyma20g24180.2 sequence type=predicted peptide gene model=Glyma20g24180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEHGRVMANCVYAPNPYHECTEACVQRIKEAKPGKPSKTKKVFKDYRRSVTDGELGKKMKEEKRRPSGCPKASNPYHVCDEYCQKADSGTMSLNFDRRKKVGSKPELPVLDSVPPSKIGAIYLSDASSPLSNYSEKTKEESKSNELIPVSGEIHVLDVMPTNHKVQSKHNGDKNASPKVVPITSVDDTGCLTKPDGGSMNFCLSGLHDNEDSDGGETESVVSESRVPVGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQLAKSKIMELMAILKDVESAQLRVAWLRNIVDEIAENIELIDEHCMAEMAKANSDREMETLNKELESNLESLAQKEQEVTDIKTRIEEIREHLSELELKSSDLAKNILSIKSKVDNLDSKSLLDELV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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