Glyma20g24170 - SoyBase

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Report for Sequence Feature Glyma20g24170

Feature Type:	gene_model
Chromosome:	Gm20
Start:	33872516
stop:	33875901
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g24170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16910	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr2:7331721-7334077 FORWARD LENGTH=571	SoyBase	E_val: 1.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0048658	GO-bp	Annotation by Michelle Graham. GO Biological Process: tapetal layer development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF26	Panther		JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_Q84WX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BHLH transcription factor n=1 Tax=Brassica napus RepID=Q84WX1_BRANA	SoyBase	E_val: 1.00E-111	ISS
UniRef100_UPI000233F048	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F048 related cluster n=1 Tax=unknown RepID=UPI000233F048	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g24170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g24170

Paralog	Evidence	Comments
Glyma10g42830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g24170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g107500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g24170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g24170

Limit To All Plant Sequences

>Glyma20g24170.2   sequence type=CDS   gene model=Glyma20g24170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATCATCATGCAAAACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATATTTTCCCTGTCTCTTCTGTGGCCTCATGCAGGGATAGTACATATCCACACCCCAGAACAAAGCCCTGCGATCTTCTTTCACAGCTTTCCACTTCCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATCTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCAGGTGGACTAGTTGAACTGTTTGTAACTAAACAAGTGCCTGAAGATCATCAACTAATAGATTATGTCATAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCCACATTGACGAGAATTCAATGAGCAACATGCAATCAAACCCACTTATAGGCGATGAAAATGAAGGGAACAACAACAGCAGGGACACTTCCACCCTTCAGAACATGTCATCACAATGGACCTCCGCAGTATTGGCAAAAGAGAAGCAAGAGGAGGACAAGGACTTGCTGAAAAACGTTGTTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAATCCAAGAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGATAGGTTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATTGTGTAAGTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGCTATGTCTCCAAACAAAAGCAGGAAGGTACTACTGTCATTGACAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGATGGGTTTGTGAAACTGATGGAGGCATTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTGTCAAATGTTTTTAAAGTGGAAAAAAAGGATAGTGAAACGGTTGAAGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTATGCGGAACCGTTACAGAGGGTGGACTCATGAGATGACAGCAACGTCGGGAAATAGTGTGGAAAGCGATCAACATCAACTCCACAACCACAACCAGATGGGTGCCTACCCGCACGAGTTTCATAGTTAA

Predicted protein sequences of Glyma20g24170

Limit To All Plant Sequences

>Glyma20g24170.2   sequence type=predicted peptide   gene model=Glyma20g24170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIIMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHIFPVSSVASCRDSTYPHPRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVPEDHQLIDYVINQCIEAVNHSMSFHIDENSMSNMQSNPLIGDENEGNNNSRDTSTLQNMSSQWTSAVLAKEKQEEDKDLLKNVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNCVSELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGTTVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPDGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDSETVEAEDVRDSLLELMRNRYRGWTHEMTATSGNSVESDQHQLHNHNQMGAYPHEFHS*

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