SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05320 | AT | Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein | chr5:1575093-1576679 REVERSE LENGTH=406 | SoyBase | E_val: 1.00E-136 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0004497 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2614 | KOG | Kynurenine 3-monooxygenase and related flavoprotein monooxygenases | JGI | ISS | |
| PTHR13789 | Panther | MONOOXYGENASE | JGI | ISS | |
| PTHR13789:SF6 | Panther | gb def: putative oxidoreductase [streptomyces coelicolor a3(2)] | JGI | ISS | |
| PF01494 | PFAM | FAD binding domain | JGI | ISS | |
| UniRef100_B6SZZ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Monooxygenase n=1 Tax=Zea mays RepID=B6SZZ4_MAIZE | SoyBase | E_val: 2.00E-135 | ISS |
| UniRef100_UPI000233F046 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F046 related cluster n=1 Tax=unknown RepID=UPI000233F046 | SoyBase | E_val: 0 | ISS |
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Glyma20g24140 not represented in the dataset |
Glyma20g24140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g107200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24140.3 sequence type=transcript gene model=Glyma20g24140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATCGTCGCATTACATGTGCTCTCATCAGTGATCTGGTGCTCGTCATCTTTCACTAATACATTCTCTATATAAACGGTTATCATCTCAGAAAGTACAAATTAAAGCACCTTATTTAGCTCTGGGAACAAGGATTTTAAAGTTACTAAATCAAAGGCTAGCTAGTACTAAAAAGATTGATCATCTTAATTTCCACGGAAAAAAAAAAGATCGAAAGTAATAATGGAATCACTACTTGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGGCTCGCAACATCCTTGGCTCTTCATAGGTTGGGTGTCCAAAGTTTGGTGTTAGAATATTCAGATACTTTGAGGGTCACTGGATTTGCTTTAACAACATGGACTAACGCTTGGAAAGCCTTGGATGCTCTTGGCGTCGGAGCCATTCTTCGTCACCAACATGTCCAGCTAAAAGAGAATGTGACTACATCTTTGATTATGGGGCAACAAACATCAAGCTTGTCTTTCGAGGGCACAGGAAAACATGGAGACTGTGAAGTTCGTTGTGTTAGAAGACAGTTAATGTTGGAAGCAATTGCTAACGTGCTTCCAAGTGGAACCATCAGATTCTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTCTAAGATTAAGATAGTCCGTCTTGCTGATGGAACAAGCATCAAAACCAAGGTATTGATTGGGTGTGATGGAATAAACTCCGTGGTGGCAAAGTGGTTGGGCTTCAAAGAGGCCTCTTTTACCGGGAGATACGTAATCAGGGGTTACAAAAAGGTGATGGATAATCATGGGCTTGAGCCCAAATTCATGCACTACTTTGGGAAGGGCTTTCGATCTGGTGTAATGCCATGTGATGACAAAACTGTTTATTGGTTTCTAACTTGGACTCCCACCAGTGAAGAGAAGGAGCTAGCAAATAACCCATCCAAAATGAAGCAATTGGTGTTGAGAAAGGTTGAGAAGATGCCAAGTAATATTAAAACCTTTATAGAGAAAACAGACCCAAAAGACATTTTAACATCTCCATTGAGATATAGACATCAGTGGGAGCTCATGTTGGGGAACATTAGCAAAGGCAATGTTTGTGTTGTTGGAGATGCATTTCACCCCATGGCCCCTGACCTAGGGCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGGTATCTAGCTGAGGCCTTCTCCAGAAAAACTTGCAAACATGTTGTTAAAAAGATGGGTGAAGAGGGGTGATTTGAAAATGGTTGCACATTTTAGGGACAAAGTTTTGCCTGATTTCCTAGCCGAACTGCTGTTGAAGAAGTCAGATTTTGATTGTGGAAAACTTAACGCCTCTAGTTAATCGAATAATATAATTAACCATGCATGCTCTCTTGTACTTAAAAAATGTGTAACTGTATGAATAGCGATTTCTAAGAATTATAATGCACTGCTGTGGAAAATTTTGTTGTCTATATTGTCTCTCGTGTGGTCTTTAAAACAACAAATGTACTACTGCAGAAAAGCCTGAGCCCTGAGGTCCCTGTTACACTTTCGTGCAAGAATAAAGATTTATTTTTTCACTTTAATGTTTTTTTATCATTAAATATTAGTTATTAATAATAAAGATTCGG
>Glyma20g24140.2 sequence type=CDS gene model=Glyma20g24140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCACTACTTGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGGCTCGCAACATCCTTGGCTCTTCATAGGTTGGGTGTCCAAAGTTTGGTGTTAGAATATTCAGATACTTTGAGGGTCACTGGATTTGCTTTAACAACATGGACTAACGCTTGGAAAGCCTTGGATGCTCTTGGCGTCGGAGCCATTCTTCGTCACCAACATGTCCAGCTAAAAGAGAATGTGACTACATCTTTGATTATGGGGCAACAAACATCAAGCTTGTCTTTCGAGGGCACAGGAAAACATGGAGACTGTGAAGTTCGTTGTGTTAGAAGACAGTTAATGTTGGAAGCAATTGCTAACGTGCTTCCAAGTGGAACCATCAGATTCTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTCTAAGATTAAGATAGTCCGTCTTGCTGATGGAACAAGCATCAAAACCAAGGTATTGATTGGGTGTGATGGAATAAACTCCGTGGTGGCAAAGTGGTTGGGCTTCAAAGAGGCCTCTTTTACCGGGAGATACGTAATCAGGGGTTACAAAAAGGTGATGGATAATCATGGGCTTGAGCCCAAATTCATGCACTACTTTGGGAAGGGCTTTCGATCTGGTGTAATGCCATGTGATGACAAAACTGTTTATTGGTTTCTAACTTGGACTCCCACCAGTGAAGAGAAGGAGCTAGCAAATAACCCATCCAAAATGAAGCAATTGGTGTTGAGAAAGGTTGAGAAGATGCCAAGTAATATTAAAACCTTTATAGAGAAAACAGACCCAAAAGACATTTTAACATCTCCATTGAGATATAGACATCAGTGGGAGCTCATGTTGGGGAACATTAGCAAAGGCAATGTTTGTGTTGTTGGAGATGCATTTCACCCCATGGCCCCTGACCTAGGGCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGGTATCTAGCTGAGGCCTTCTCCAGAAAAACTTGCAAACATGTTGTTAAAAAGATGGGTGAAGAGGGTAAGGCCAAGGAGCAATACAAAAAAATTGATGCTAGCTTGAGGAAATATGCAAAAGAGAGAAGATGGAGAAACATTGATATAAGTGTTACATCTTATGTTCTGGGGTTTGTTTTGCAGGGTGATTTGAAAATGGTTGCACATTTTAGGGACAAAGTTTTGCCTGATTTCCTAGCCGAACTGCTGTTGAAGAAGTCAGATTTTGATTGTGGAAAACTTAACGCCTCTAGTTAA >Glyma20g24140.3 sequence type=CDS gene model=Glyma20g24140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCACTACTTGTTGAAGACATTGTGATTGTGGGAGCTGGAATTGCTGGGCTCGCAACATCCTTGGCTCTTCATAGGTTGGGTGTCCAAAGTTTGGTGTTAGAATATTCAGATACTTTGAGGGTCACTGGATTTGCTTTAACAACATGGACTAACGCTTGGAAAGCCTTGGATGCTCTTGGCGTCGGAGCCATTCTTCGTCACCAACATGTCCAGCTAAAAGAGAATGTGACTACATCTTTGATTATGGGGCAACAAACATCAAGCTTGTCTTTCGAGGGCACAGGAAAACATGGAGACTGTGAAGTTCGTTGTGTTAGAAGACAGTTAATGTTGGAAGCAATTGCTAACGTGCTTCCAAGTGGAACCATCAGATTCTTGTCAAAGGTTGTTGCTATTGAGGAATCTGGTTTCTCTAAGATTAAGATAGTCCGTCTTGCTGATGGAACAAGCATCAAAACCAAGGTATTGATTGGGTGTGATGGAATAAACTCCGTGGTGGCAAAGTGGTTGGGCTTCAAAGAGGCCTCTTTTACCGGGAGATACGTAATCAGGGGTTACAAAAAGGTGATGGATAATCATGGGCTTGAGCCCAAATTCATGCACTACTTTGGGAAGGGCTTTCGATCTGGTGTAATGCCATGTGATGACAAAACTGTTTATTGGTTTCTAACTTGGACTCCCACCAGTGAAGAGAAGGAGCTAGCAAATAACCCATCCAAAATGAAGCAATTGGTGTTGAGAAAGGTTGAGAAGATGCCAAGTAATATTAAAACCTTTATAGAGAAAACAGACCCAAAAGACATTTTAACATCTCCATTGAGATATAGACATCAGTGGGAGCTCATGTTGGGGAACATTAGCAAAGGCAATGTTTGTGTTGTTGGAGATGCATTTCACCCCATGGCCCCTGACCTAGGGCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGGTATCTAGCTGAGGCCTTCTCCAGAAAAACTTGCAAACATGTTGTTAAAAAGATGGGTGAAGAGGGGTGA
>Glyma20g24140.2 sequence type=predicted peptide gene model=Glyma20g24140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLLVEDIVIVGAGIAGLATSLALHRLGVQSLVLEYSDTLRVTGFALTTWTNAWKALDALGVGAILRHQHVQLKENVTTSLIMGQQTSSLSFEGTGKHGDCEVRCVRRQLMLEAIANVLPSGTIRFLSKVVAIEESGFSKIKIVRLADGTSIKTKVLIGCDGINSVVAKWLGFKEASFTGRYVIRGYKKVMDNHGLEPKFMHYFGKGFRSGVMPCDDKTVYWFLTWTPTSEEKELANNPSKMKQLVLRKVEKMPSNIKTFIEKTDPKDILTSPLRYRHQWELMLGNISKGNVCVVGDAFHPMAPDLGQGGCCALEDGIILARYLAEAFSRKTCKHVVKKMGEEGKAKEQYKKIDASLRKYAKERRWRNIDISVTSYVLGFVLQGDLKMVAHFRDKVLPDFLAELLLKKSDFDCGKLNASS* >Glyma20g24140.3 sequence type=predicted peptide gene model=Glyma20g24140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESLLVEDIVIVGAGIAGLATSLALHRLGVQSLVLEYSDTLRVTGFALTTWTNAWKALDALGVGAILRHQHVQLKENVTTSLIMGQQTSSLSFEGTGKHGDCEVRCVRRQLMLEAIANVLPSGTIRFLSKVVAIEESGFSKIKIVRLADGTSIKTKVLIGCDGINSVVAKWLGFKEASFTGRYVIRGYKKVMDNHGLEPKFMHYFGKGFRSGVMPCDDKTVYWFLTWTPTSEEKELANNPSKMKQLVLRKVEKMPSNIKTFIEKTDPKDILTSPLRYRHQWELMLGNISKGNVCVVGDAFHPMAPDLGQGGCCALEDGIILARYLAEAFSRKTCKHVVKKMGEEG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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