SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23590 | AT | Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein | chr5:7953870-7954936 REVERSE LENGTH=296 | SoyBase | E_val: 1.00E-114 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG0691 | KOG | Molecular chaperone (DnaJ superfamily) | JGI | ISS | |
| PTHR24078 | Panther | DNAJ HOMOLOG SUBFAMILY C MEMBER | JGI | ISS | |
| PTHR24078:SF13 | Panther | DNAJ HOMOLOG SUBFAMILY C MEMBER 24 | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| UniRef100_B9S9V4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor cwc23, putative n=1 Tax=Ricinus communis RepID=B9S9V4_RICCO | SoyBase | E_val: 1.00E-122 | ISS |
| UniRef100_I1NF82 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF82_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g24050 not represented in the dataset |
Glyma20g24050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g106400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24050.2 sequence type=transcript gene model=Glyma20g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGCAAAGAATTGAAACACAACAGAAATCAAACTCGTGTGCTTCTCAATTCAAACCCAATAACAAAACATCAAACCTCAAATACTATATAGCACAAATTTATCCAAATCAAACTCGGTCTGAACTTGAACTAACAAAAAAACAACACATATAAAAATCTATGCATTCCTGAAATTGTTTTTAAAAATTGTTTTCCCGATCCCAAGAAGAGATGATATGACTCATTTGATTTAGAAAACGGTGTCGTGTCTCTCCCTCTCTCTGTGTTCCAAAACCCAAAATCCCATTCCGGCTACGATTGCCACGCTGGTGTTTAATTTAAAAAGGGGCGTCGTAGCACCAGCAACATAGGGTTAGGGTTAGGGTTAGGGTTTTGACGCATCGATTGTGGTCAAAATGGAGGCAGAGATGGATCACTACGCGGTGCTAGGGTTACCGTCCGGCGAAGAAGGCGCGAAACTAACGGAGAAAGAAATCAACAAGGCCTACCGATGGAAAGCTCTCGAATTGCACCCCGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTCCGCACCTCGTACGACATCCTCAGGGACGACAAGGCCCGCAAGTTGTTCGACGACCTCTTGCGCGTCAAGCGAGAGCGCGAGCTCCGCAATTTGCAGCGCGACGGAAAGCGCCGCAAGATGGTCTCCGATCTCGAGCGCCGGGAGCGCGACGCCAACGCCCCCGACCCCGCCGCGAAGGAGCGCGAAGAGGAGGCCAGGATTGCGAGGCAACTCAAGGAGGAGATCGCGAGGATTCGTGCTATGCACGGGAAGAAGGAGGAGGCACCGGCGGCGGCGCCGGCGAAGGAGAAGGATAGTGGCGGTAGTAGTGGAGTGGATCAAGAGAAGGTTCTGAAGGTTTCGTGGGAGAAGGTGGGTGAGGATTATTCGGCTGATAAGTTGAGGGAATTGTTCTCCAAGTTTGGTGAAGTGGAAGATGTTGTCATCAAGGGGAGTAAGAAGAAGGGTTCTGCTCTCGTTGTTATGGCCATTAAAGAAGGAGCTGTTGCTGCTACTGGGAGTGTGATTGGTCATCTTGCCAATCCGTTGCTGGTTGTACCTCTTAAACCAGCATCTGTGGCTGATTCTTCGAGCGTTCCAAAATCTGCTGAAACCACCAGGATGAGTAATCTGGTTGGTGCTGGGTATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCGGAAAAGCAAAGATGATGCTGTCAGAATGATAATCATAAGATTCAATTGTTTGGCATGGTCATCCCCAGTTCTATTTATTAGGTACTGAAATTACCATTGTCATTAATGATTCATCATTAGTGATCTGTCAACCGGAGTCTTTGTATCCAGATATACTAATTGAGGAGTAGTATACTAGAGAATGTATGTTTACTGTGGATTTTTTAAGTCATCTTTTAGTTGTTCTTGGCCACCTTGCTCAATGAAATAATATTTTATGGTACAAACTTTATGATTCTCTTGCAGAACTGTAAATGGTTCA
>Glyma20g24050.1 sequence type=CDS gene model=Glyma20g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGCAGAGATGGATCACTACGCGGTGCTAGGGTTACCGTCCGGCGAAGAAGGCGCGAAACTAACGGAGAAAGAAATCAACAAGGCCTACCGATGGAAAGCTCTCGAATTGCACCCCGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTCCGCACCTCGTACGACATCCTCAGGGACGACAAGGCCCGCAAGTTGTTCGACGACCTCTTGCGCGTCAAGCGAGAGCGCGAGCTCCGCAATTTGCAGCGCGACGGAAAGCGCCGCAAGATGGTCTCCGATCTCGAGCGCCGGGAGCGCGACGCCAACGCCCCCGACCCCGCCGCGAAGGAGCGCGAAGAGGAGGCCAGGATTGCGAGGCAACTCAAGGAGGAGATCGCGAGGATTCGTGCTATGCACGGGAAGAAGGAGGAGGCACCGGCGGCGGCGCCGGCGAAGGAGAAGGATAGTGGCGGTAGTAGTGGAGTGGATCAAGAGAAGGTTCTGAAGGTTTCGTGGGAGAAGGTGGGTGAGGATTATTCGGCTGATAAGTTGAGGGAATTGTTCTCCAAGTTTGGTGAAGTGGAAGATGTTGTCATCAAGGGGAGTAAGAAGAAGGGTTCTGCTCTCGTTGTTATGGCCATTAAAGAAGGAGCTGTTGCTGCTACTGGGAGTGTGATTGGTCATCTTGCCAATCCGTTGCTGGTTGTACCTCTTAAACCAGCATCTGTGGCTGATTCTTCGAGCGTTCCAAAATCTGCTGAAACCACCAGGATGAGTAATCTGGTTGGTGCTGGGTATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCGGAAAAGCAAAGATGA >Glyma20g24050.2 sequence type=CDS gene model=Glyma20g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGCAGAGATGGATCACTACGCGGTGCTAGGGTTACCGTCCGGCGAAGAAGGCGCGAAACTAACGGAGAAAGAAATCAACAAGGCCTACCGATGGAAAGCTCTCGAATTGCACCCCGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTCCGCACCTCGTACGACATCCTCAGGGACGACAAGGCCCGCAAGTTGTTCGACGACCTCTTGCGCGTCAAGCGAGAGCGCGAGCTCCGCAATTTGCAGCGCGACGGAAAGCGCCGCAAGATGGTCTCCGATCTCGAGCGCCGGGAGCGCGACGCCAACGCCCCCGACCCCGCCGCGAAGGAGCGCGAAGAGGAGGCCAGGATTGCGAGGCAACTCAAGGAGGAGATCGCGAGGATTCGTGCTATGCACGGGAAGAAGGAGGAGGCACCGGCGGCGGCGCCGGCGAAGGAGAAGGATAGTGGCGGTAGTAGTGGAGTGGATCAAGAGAAGGTTCTGAAGGTTTCGTGGGAGAAGGTGGGTGAGGATTATTCGGCTGATAAGTTGAGGGAATTGTTCTCCAAGTTTGGTGAAGTGGAAGATGTTGTCATCAAGGGGAGTAAGAAGAAGGGTTCTGCTCTCGTTGTTATGGCCATTAAAGAAGGAGCTGTTGCTGCTACTGGGAGTGTGATTGGTCATCTTGCCAATCCGTTGCTGGTTGTACCTCTTAAACCAGCATCTGTGGCTGATTCTTCGAGCGTTCCAAAATCTGCTGAAACCACCAGGATGAGTAATCTGGTTGGTGCTGGGTATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCGGAAAAGCAAAGATGA
>Glyma20g24050.1 sequence type=predicted peptide gene model=Glyma20g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAEMDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDDLLRVKRERELRNLQRDGKRRKMVSDLERRERDANAPDPAAKEREEEARIARQLKEEIARIRAMHGKKEEAPAAAPAKEKDSGGSSGVDQEKVLKVSWEKVGEDYSADKLRELFSKFGEVEDVVIKGSKKKGSALVVMAIKEGAVAATGSVIGHLANPLLVVPLKPASVADSSSVPKSAETTRMSNLVGAGYQAFEDSVLKKLQKAAEKQR* >Glyma20g24050.2 sequence type=predicted peptide gene model=Glyma20g24050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAEMDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDDLLRVKRERELRNLQRDGKRRKMVSDLERRERDANAPDPAAKEREEEARIARQLKEEIARIRAMHGKKEEAPAAAPAKEKDSGGSSGVDQEKVLKVSWEKVGEDYSADKLRELFSKFGEVEDVVIKGSKKKGSALVVMAIKEGAVAATGSVIGHLANPLLVVPLKPASVADSSSVPKSAETTRMSNLVGAGYQAFEDSVLKKLQKAAEKQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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