SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16950 | AT | Annotation by Michelle Graham. TAIR10: transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=891 | SoyBase | E_val: 0 | ISS |
| GO:0000059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0051170 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear import | SoyBase | N/A | ISS |
| GO:0052541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0052546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG2023 | KOG | Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) | JGI | ISS | |
| PTHR10527 | Panther | IMPORTIN BETA | JGI | ISS | |
| PTHR10527:SF3 | Panther | IMPORTIN BETA-3 SUBUNIT | JGI | ISS | |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| PF03810 | PFAM | Importin-beta N-terminal domain | JGI | ISS | |
| UniRef100_D7L890 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein transporter n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L890_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DB7C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DB7C related cluster n=1 Tax=unknown RepID=UPI000233DB7C | SoyBase | E_val: 0 | ISS |
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Glyma20g24040 not represented in the dataset |
Glyma20g24040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g42960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g106300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g24040.1 sequence type=CDS gene model=Glyma20g24040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGGCAGCGGCGACTACTCCATCGTGGCAGCCTCAGGAGCAAGGGTTCAAGGAGATCTGCGGCCTACTTGAGCAGCAGATTTCGCATTCTTCTTCCGCCGATAAGGCTCAGATTTGGCAACACCTTCAGCGCTACTCGCATCTCCCTGACTTCAACAATTACCTCGCCTTCATCTTCTCCCGCGCCGAGGGAAAGTCGGTGGAGGTTCGGCAGGCTGCAGGGTTATATCTGAAGAATAACCTCAGAAACACGTTCAAATCTATGCAGCCTGCATACCAACAGTATGTGAAATCAGAGTTGCTGCCTTGTCTTGGTGCAACAGATAAGCACATAAGGTCTACGGCAGGAACTATTATTAGTGTTGTTGTTCAAATAGGAGGAGTTGTTGGGTGGCCTGAATTGTTGCAAGCCCTTGTAAATTGCTTGGATAGTAATGATCTAAATCACATGGAAGGTGCAATGGATGCGTTATCTAAGATCTGTGAGGATATTCCCCAATATCTTGACTCTGATGTACCAGGGTTAGCAGAACGCCCTATTAACATATTTCTTCCCAGATTATTTCGGTTTTTCCAATCTCCTCATGCTTCATTGAGAAAATTATCACTGGGTTCTGTAAATCAATACATTATGTTAATGCCTTCTGCCTTATACGTATCCATGGATCAATATCTTCAAGGTCTGTTTATTCTCGCTAATGACGCTGCTGCTGAAGTGCGGAAGTTGGTTTGTGCAGCATTTGTTCAGCTAATTGAAGTTCGCCCATCTTTCTTGGAGCCACATTTACGGAATGTTATTGAATACATGTTACAAGTCAACAAGGATACAGATGATGAAGTAGCCCTTGAAGCTTGTGAATTTTGGTCTGCTTATTGTGATGCTCAACTGCCACCTGAAAACTTAAGAGAATTCTTGCCCCGTCTTATTCCAGTATTGCTGTCAAACATGGCTTATGCAGATGATGATGAATCAGTTATTGAAGCTGAGGAAGATGGTTCTCAGCCTGATCGAGATCAGGATCTTAAACCTCGATTTCACGTATCAAGGTTTCATGGATCAGATGAAGTAGAAGACGATGATGATGATGTTGTCAACACATGGAATTTACGGAAATGCAGTGCAGCTGCTCTTGATATTCTTTCAAATGTGTTTGGAGATGAGATCCTTCCAACTCTTATGCCTATTGTTGAGGCTAAGTTATCTGCTGGTGGGGATGATGCTTGGAAAGATAGGGAAGCTGCTGTCTTGGCTCTTGGTGCTATAGGCGAAGGTTGCATCAATGGTCTTTATCCGCATCTGTTGGAGATTGTGGCATTTCTTATCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACACTATCACGATTTAGCAAATTTATTGTTCAGGGTATTGGGCATCCTAAAGGCTATGAACAATTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTCCAAGAGGCTGCTTGTTCAGCCTTTGCAACTCTGGAAGAGGAGGCTGCTGAAGAGTTGGCTCCACGCTTGGAAATTATACTGAAGCACCTGATGACTGCATTTGGGAAATATCAGAGGCGAAACCTCAGAATTGTATATGATGCTATTGGAACTCTAGCTGAAGCTGTTGGAGGAGAGCTGAATCAGCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATGCTCTGGGTACTGGTTTTGCTCAATTTGCTGAACCTGTATTTAGGAGGTGCATAAATATAATCCAGACCCAACAATTTGCTAAGGCTGATCCTGCCGCCACCACAGGGGTTCAGTATGACAAGGAGTTTATTGTATGCTCTCTTGATTTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGAATAGAGAGTTTGGTTGCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTGTGGATGATGCTCCTGATGTTAGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCGCGAGTGTGCCCGGTTCATTTGCACCCTCGTTTGTCTGAGTTTCTTGAGGCTGCAGCCAAGCAACTGGAGATTTCTAAGGTAAAGGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGGTTCGTCAAGAAATTTCTCCCATTGTTTTAACTGTAATTTCATGCCTGGTCCCAATTCTTCAGCATGCAGAGGGACTCAACAAGTCACTTATAGAAAATAGTGCAATAACATTGGGGAGGCTTGCATGGGTCTGTCCGGAGCTTGTATCACCACATATGGAGCATTTCATGCAATCTTGGTGCACTGCTTTGTCAATGATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGGTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATGAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTACATGGGTATAAGCAGATGCTGCGCAATGGAGCGTGGGACCAGTGTATGTCTGCTTTGGAGCCTCCAGTAAAAGAAAAGCTTTCGAAATATCAAGTATAA
>Glyma20g24040.1 sequence type=predicted peptide gene model=Glyma20g24040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAAATTPSWQPQEQGFKEICGLLEQQISHSSSADKAQIWQHLQRYSHLPDFNNYLAFIFSRAEGKSVEVRQAAGLYLKNNLRNTFKSMQPAYQQYVKSELLPCLGATDKHIRSTAGTIISVVVQIGGVVGWPELLQALVNCLDSNDLNHMEGAMDALSKICEDIPQYLDSDVPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQYIMLMPSALYVSMDQYLQGLFILANDAAAEVRKLVCAAFVQLIEVRPSFLEPHLRNVIEYMLQVNKDTDDEVALEACEFWSAYCDAQLPPENLREFLPRLIPVLLSNMAYADDDESVIEAEEDGSQPDRDQDLKPRFHVSRFHGSDEVEDDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVEAKLSAGGDDAWKDREAAVLALGAIGEGCINGLYPHLLEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGHPKGYEQFDNVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELAPRLEIILKHLMTAFGKYQRRNLRIVYDAIGTLAEAVGGELNQPVYLDILMPPLIEKWQQLSNSDKDLFPLLECFTSIAHALGTGFAQFAEPVFRRCINIIQTQQFAKADPAATTGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVAQCSLRDLLLHCCVDDAPDVRQSAFALLGDLARVCPVHLHPRLSEFLEAAAKQLEISKVKEAISVANNACWAIGELAVKVRQEISPIVLTVISCLVPILQHAEGLNKSLIENSAITLGRLAWVCPELVSPHMEHFMQSWCTALSMIRDDVEKEDAFRGLCAMVKANPSGALSSLVYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKEKLSKYQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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