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Report for Sequence Feature Glyma20g23890

Feature Type:gene_model
Chromosome:Gm20
Start:33617973
stop:33630058
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38470AT Annotation by Michelle Graham. TAIR10: ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004712GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016597GO-mf Annotation by Michelle Graham. GO Molecular Function: amino acid binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI ISS
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI ISS
PTHR23257:SF82Panther PROTEIN KINASE ATMRK1 JGI ISS
PF01842PFAM ACT domain JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_D2KTV1UniRef Annotation by Michelle Graham. Most informative UniRef hit: ACT-domain-containing protein kinase n=1 Tax=Lotus japonicus RepID=D2KTV1_LOTJA SoyBaseE_val: 0ISS
UniRef100_I1NF71UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF71_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g43060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g105300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g23890.1   sequence type=CDS   gene model=Glyma20g23890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGACGGAGGGAAACAACAGCAGCTGCGGCAGCGGCAGCGGAGTGCAGCACCATACGACGTCGTCCTCGTCCTCGCCGGCGCAGAGCCGGCTACAGCGGCAGAAGCTGGAAGTATACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCAACGAAGAAGCCATGCAACCTGGCTTCCACGATCAGCTTTGGGCTCACTTTAATCGACTCCCTACGTGGTATGCGCTGGATGTGAATGTGGAAAGAGCCGCAGATGTTCTTATGCACAAGAGATTGCTGCATTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTTCATCCCACATCCAATGGAAACTCAGCTGACACTTTTGAATCAGATGATCCTGGGATAGAATCTGGACAAAGTTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCATTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGCAAATAATTCTGAAGACATAGAAGAGGAACAATCTGCACATGCCAATGTTCAATATTCACGGCATATGCATGAAATCACCATCTCAACAGATGACAAGCCCAAGCTTCTCAGTCAGTTAACTGCTTTGCTTTCTGAGATTGGACTGAACATCCAAGAAGCACATGCCTTTTCTACAACTGATGGTTTCTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCCATGAGGAAACCGAAAAGCTTAAAGCTGCTTTGGAAAGAGGAGTCTTGAAGAAGATTGAGAGGCAGGTGAAGTCTAGTCCACAATCCGTATCTTCTGTTGACAAGCCCGATCAAGCAAAGATGAAAAGCGAACTGGATTATTTGACAATACCAACTGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATATTGTAGCCAGGAAGTGGCCATCAAAGTTCTCAAGGCTGACCATGTAAACTCAGAATTGCAGAGAGAGTTCGCACAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCAGGCTTATGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTACGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTTCCTACCCTTCTCAAAGTAGCAATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAATATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGATGAAAATTGTACTGTAAAGGTCGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAATCTGGTGTCATGACTGCAGAAACTGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACCGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTACGACCCACCATCCCCAAGAACACTCATCCGAAGTATGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTGAGGCCCGATTTCTCCGAAATTATCGAGATCCTGCAGCAGTTAGCAAAGGAGGTTGGAGATGGAGAGGAGCGACACAAGGATAAATATGGAGGACTTCTGTCTGTCCTTAGACGAGGACATCACTAA

>Glyma20g23890.1   sequence type=predicted peptide   gene model=Glyma20g23890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTEGNNSSCGSGSGVQHHTTSSSSSPAQSRLQRQKLEVYNEILRRLKDSGNEEAMQPGFHDQLWAHFNRLPTWYALDVNVERAADVLMHKRLLHLAHDPANRPSIEVRLVQVHPTSNGNSADTFESDDPGIESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANNSEDIEEEQSAHANVQYSRHMHEITISTDDKPKLLSQLTALLSEIGLNIQEAHAFSTTDGFSLDVFVVEGWPHEETEKLKAALERGVLKKIERQVKSSPQSVSSVDKPDQAKMKSELDYLTIPTDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKADHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPGLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENCTVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKYVELLERSWQQDPTLRPDFSEIIEILQQLAKEVGDGEERHKDKYGGLLSVLRRGHH*







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