SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07610 | AT | Annotation by Michelle Graham. TAIR10: Transcription factor jumonji (jmjC) domain-containing protein | chr3:2426148-2432876 FORWARD LENGTH=1027 | SoyBase | E_val: 4.00E-81 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0032776 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation on cytosine | SoyBase | N/A | ISS |
| GO:0033169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 demethylation | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0032454 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone demethylase activity (H3-K9 specific) | SoyBase | N/A | ISS |
| KOG1356 | KOG | Putative transcription factor 5qNCA, contains JmjC domain | JGI | ISS | |
| PTHR12549 | Panther | JUMONJI DOMAIN CONTAINING PROTEIN-RELATED INCLUDING HAIRLESS | JGI | ISS | |
| PTHR12549:SF1 | Panther | HAIRLESS PROTEIN | JGI | ISS | |
| UniRef100_G7IE70 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 3B n=1 Tax=Medicago truncatula RepID=G7IE70_MEDTR | SoyBase | E_val: 4.00E-138 | ISS |
| UniRef100_UPI000233F03E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F03E related cluster n=1 Tax=unknown RepID=UPI000233F03E | SoyBase | E_val: 0 | ISS |
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Glyma20g23860 not represented in the dataset |
Glyma20g23860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g104900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23860.2 sequence type=CDS gene model=Glyma20g23860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCCCGGAAGGAAGAAGCGGCAAGGGAACACATCCATTATTCCTGTGGATGCAAACCCCACTCAGCAAAAAGCACAATCTTTGGATATTGATGCTGAGTGTGAGAGTGAGACCAAAAGAATGAAATTTGCTGAGGAAGATGGTGATGGGGCAGGGGGTTCTTCTTCTGTTGTGAAAAAGAAGCGTGGCAGAAAAAGTAAAAAGGAGAAGCAGGACACGGAAAAGATGTTAGAGAGCAATTTGTCGGAGAAGAAAGATACTCAAGGCGAATACCACGGTGAAAATTGTGGAGTAGGAGGGTCTTCTTCTGTTCAAGAAAGTGCGAAAAAGAAACGTGGAAGAAAGAGTAAAAAGGAGAAGGAGGACATGGAAAAGAAGAAGATGGCAGAGGAGAAAGATGCTCAAAACGAAAACCATGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTGTGTTGTAGATGGTGTGCCAAAGAAGCGTGGCAGAAAAAGTAAGAAGGAGAAGGAAGACATGGAAAAAAAGATGTTAGAGGAGAAAGATGCTCAAAACGAAAACCACGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTCTGTTGTAGAAGCTGTGGTAAAGAAGCGAGGTAGAAAGAGTAAAAAGGAGAAGGAAGACATGGAAAGGAAGATATTAGAGGAGAAAGATGCTCAAAACGAAAACCATGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTCTGTTGTAGATGGTGTGCCAAAGAAGCGTGGCAGAAAAAGTAAGAAGGAGAAGGAAGACATGGAAAAAAAGATGTTAGAGGGAAATTTGCTGGAGAAGAAAGATGTTCAAGACGTTAACCATGCCGAAAATGGTGGGGTACCTGATATGAGGCGTGGAAGTAAAAGAAAGATGCTTAAGGAAGATGATGGTGAGTTTGAAATGCCTGTGGATTCTTCAGGAAGTAGCATTCAGAAACAATATAGTCTTAGGGCCCCTAGAGTCAATATAGAAGAGGCAATGCCAAAAATCAACAAGAGAGATCCTAAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACACGTTGTAAGAGGAAAAGATTTTGTGTACACTGTATAGAAAATTGGTATCCTCATTTGAAAGAGGATTATATTGCTGAGGCATGCCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCCAATCAACTTATTAAAAAAATGAAGAAAAAAGAAGAAACCAATGAAAATGAGAAGATTGAACTCTCTATGCATTTGTTGCAAGTACTTCTTCCGTATTTAAGGCTGTTGGATGAAGAACAGATGATTGAGAATGAGACAGAAGCCAAGATACGGGGGCTCTCAGTCTCAGAGCTAAATGTAGCACAGGCAAATTTTGATAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCGACCTTTGTCTCATCTGTTGTCGCGAGCTTCGAACTGGCCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTGTCTGTCAAGGTCGTGATTACCTGCATGGTGAGGAAAATATAAGTGTAAAACAAAATGAACCAAATGCTGTTGAACAAAATGAACCAAATGCTGTTGCTGAGACTGTAGTTCGTGAGTGGTCAAGATCTGGGTGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGTCAATGATGAATGTAACCATGGTTTTCTTGAACTGAGAAGCATATTAGGTCAACATTTTATCACTGATTTAGTGCATAAAGCAAACGAACTAGCACAAGCATACAAGCTTCAAGATGTAGTTAAGACCCCTGACAACTTCTGTTCGTGTTTGAGGCTTGATAGAAACACAGATGTTAGATATAATAATATGAGGAAGCCAATTGATTGCTTAGATTGGTGCGAGGGAGAAATTAATATCCACCAATTCTTTACTGGGTATACAAAAGTTCGTGAGGATTGGCATAGTTGGCCTCAAATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGCTTGCCTCGACATTGTGCAGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTCAAAGGTTCTCTTAACTTAGCTGTGAAGTTGCCAACAGATTGTCTAAAACCAGACATGGGGCCAAAGACGTATATTGCTTACGGATTTCATCAGGAGCTCGGGCGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGGAACCAAAGCATCTCATTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAACAAGACAAAAGGGAGCTACTTGGTGATGATCAAAATAGAGAAACTAGTGTTGACATGCTTAATAATTTGTCTTCTACTATAAATGCTTTGGACAAGCAAAATAGTGTCCAACAAGAAAGTGATATGTTGTCTGGGGGGGATGGTTCAGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCAGAGGAAGCATTTCAGAGAGTTCAGGCATCTCCATTGCTGTCCTTTAAAGCAGGTAATTTAA
>Glyma20g23860.2 sequence type=predicted peptide gene model=Glyma20g23860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPGRKKRQGNTSIIPVDANPTQQKAQSLDIDAECESETKRMKFAEEDGDGAGGSSSVVKKKRGRKSKKEKQDTEKMLESNLSEKKDTQGEYHGENCGVGGSSSVQESAKKKRGRKSKKEKEDMEKKKMAEEKDAQNENHGENGGVGGSSCVVDGVPKKRGRKSKKEKEDMEKKMLEEKDAQNENHGENGGVGGSSSVVEAVVKKRGRKSKKEKEDMERKILEEKDAQNENHGENGGVGGSSSVVDGVPKKRGRKSKKEKEDMEKKMLEGNLLEKKDVQDVNHAENGGVPDMRRGSKRKMLKEDDGEFEMPVDSSGSSIQKQYSLRAPRVNIEEAMPKINKRDPKWIEEESLMCHQCQRNDKGRVVRCTRCKRKRFCVHCIENWYPHLKEDYIAEACPVCRGNCNCKACLRSNQLIKKMKKKEETNENEKIELSMHLLQVLLPYLRLLDEEQMIENETEAKIRGLSVSELNVAQANFDKDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRTGQLVGGADPIMLEFVCQGRDYLHGEENISVKQNEPNAVEQNEPNAVAETVVREWSRSGWHAESNGSIPCPKVNDECNHGFLELRSILGQHFITDLVHKANELAQAYKLQDVVKTPDNFCSCLRLDRNTDVRYNNMRKPIDCLDWCEGEINIHQFFTGYTKVREDWHSWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLKGSLNLAVKLPTDCLKPDMGPKTYIAYGFHQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPKHLIAIEKLKQKHFEQDKRELLGDDQNRETSVDMLNNLSSTINALDKQNSVQQESDMLSGGDGSEGALWDIFRRQDVPKLQEYQRKHFREFRHLHCCPLKQVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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