Report for Sequence Feature Glyma20g23700
Feature Type: gene_model
Chromosome: Gm20
Start: 33477861
stop: 33480081
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g23700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G23280 AT
Annotation by Michelle Graham. TAIR10: TCP family transcription factor | chr5:7843017-7843769 FORWARD LENGTH=250
SoyBase E_val: 6.00E-85 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR11584 Panther
SERINE/THREONINE PROTEIN KINASE
JGI ISS
PTHR11584:SF275 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF03634 PFAM
TCP family transcription factor
JGI ISS
UniRef100_G7IE92 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor PCF2 n=1 Tax=Medicago truncatula RepID=G7IE92_MEDTR
SoyBase E_val: 4.00E-86 ISS
UniRef100_I1NF57 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF57_SOYBN
SoyBase E_val: 2.00E-174 ISS
Expression Patterns of Glyma20g23700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g23700
Paralog Evidence Comments
Glyma10g43190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g23700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g103400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g23700
Coding sequences of Glyma20g23700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g23700.1 sequence type=CDS gene model=Glyma20g23700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGAACTCCGACGGCACCACTAACGGCGCAATCACTGAGGCGCAGAGACAGCAGCAACAGCAAGGGGGGAAGGCGTTAGCCGTTAAGAAGCCGCCGTCAAAGGACCGTCACAGCAAGGTGGACGGTCGCGGGCGCCGCATAAGGATGCCAATCATATGCGCCGCACGTGTGTTCCAGCTCACGCGCGAGCTTGGCCACAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAGGCCGAGCCCTCCGTCATCGCCGCCACCGGCACCGGCACCATCCCCGCCAGCTTCTCCTCCGTCTCCCTCTCCTCCCCTTCCTCCACCTCCGACTACAAGCCCCAGTTACTCGCTCCCACTCCCTTCATCCTCGGCAAGCGCATACGCACCGACGAAGACTCTTCCAAAGACGAAGCTGTTTCCGTGGGCCCCTCTCTCGTGGGGCCGTATGCCCCTCCCGGACCAGGGGTCGTCCCGGCCTGGCCCGATTTCGGACAAATTTGGAGTTTTGTCGCCGCCGCTGCTGCTCCCGAAATGGTGTCGGTGCCGCAGCAGCAGCAGCAGCAGGCTTCGTTGTTCGCTCATCACCACCGTCAGCAGCAGCAGCTGGCCATCGGAGAAGCTTTGGCGGCGAGGGTGGGAAATTACCTTCCGGGACATCTGAATTTGCTCGCTTCATTGTCAGGTGGACCTGGGAATTCTGGTCGGAGAGACGATGAGCCTCGTTGA
Predicted protein sequences of Glyma20g23700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g23700.1 sequence type=predicted peptide gene model=Glyma20g23700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNSDGTTNGAITEAQRQQQQQGGKALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSSVSLSSPSSTSDYKPQLLAPTPFILGKRIRTDEDSSKDEAVSVGPSLVGPYAPPGPGVVPAWPDFGQIWSFVAAAAAPEMVSVPQQQQQQASLFAHHHRQQQQLAIGEALAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
