SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01290 | AT | Annotation by Michelle Graham. TAIR10: cofactor of nitrate reductase and xanthine dehydrogenase 3 | chr1:114299-115296 FORWARD LENGTH=270 | SoyBase | E_val: 3.00E-91 | ISS |
| GO:0006777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| PTHR22960 | Panther | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A | JGI | ISS | |
| PF01967 | PFAM | MoaC family | JGI | ISS | |
| UniRef100_G7K3U1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Molybdopterin biosynthesis protein CNX3 n=1 Tax=Medicago truncatula RepID=G7K3U1_MEDTR | SoyBase | E_val: 1.00E-128 | ISS |
| UniRef100_I1NF50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NF50_SOYBN | SoyBase | E_val: 1.00E-169 | ISS |
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Glyma20g23590 not represented in the dataset |
Glyma20g23590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g102700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23590.3 sequence type=transcript gene model=Glyma20g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAATAGTTCCCTGTACGTAGACTGCGATTTTTGAGAATTAATATGAAATTTGATGCTAATTGCTATGTACGTAGGGTTTATTTTATTTGATTTTTATTTTTTGCTAACAATACTATGTACGTATATAATTCACATGTTGACTCTAAAATTTTGAAGTTGCCGACCCTAACCCTAAAAATAATCCACTGAAGATTAACACTTGCTTTTCTTCTTTCACCTATCGCATTCTACCGCCGTGAGAGCGTAGTGCAGGCTGCTAAGGCGAAAGCACCGGTAGCTGAGGCACCATAACATCATGAGCAAGCGCGATTAATCCCCGATACAGAGATTCAACCACGATTCAGGAACAAAAACGAAACAACCTCCGATTCGTATTGGTAGCAGCTGGAATCGTATCGAATCCTGTAGAGTAAATAGCAGCAGCAGGATCTGCATACGATATGATGCTTCTTCGGAGAATTATTGCTGCATGTCCTCAATCAAAGAGGATGTTCAGCTCTTCTGTTACCCATGGCTATGAAAGTGCTATTCAAGAACTCAACAAGGAAATGGAATCGGTATTCGGTGAACCTCCTACAAATGGACTAGCTAGCTCTGCAAGCAATAGTCGGTTGAACAATGAATCCCAGCTGTCATCTCCAAACACAGGTGAAAGTTCTTTTGAATTGACTCATACTGGCGAATCAGGGGAAGCTCAAATGGTAGATGTGTCTCCAAAAGAAAGCAGTAAAAGAACTGCCATTGCTGTTTGCAAGGTAATTCTTGGAAAGAAGGTGTTTGATTTGGTCTTGGCCAATCAAATGGCGAAAGGAGATGTGCTTACTGTAGCGAAAATTGCGGGCATAACCGCAGCAAAGCAAACTAGCAACCTTATTCCGTTGTGCCATAATATAAGCCTTTCACACGTGCAAGTGGACTTGAGATTGAATCATGAGGACTTCAGTGTAACAATAGAAGGGGAAGCTGCATCAACCGGTAAAACCGGGGTTGAGATGGAAGCAATGACAGCAGTCTCTATTGCAGGCTTAACCGTGTATGATATGTGTAAGGCTGCTTCAAAAGATATAGCCATTACAGATGTAAGACTTATGCATAAATCTGGTGGAAAAAGTGGAGAGTATTGGTGGACACAATGATTGTTTTATATGCATTCCAATGGAGAACAACATTTCCAAAAATGCTATTCTTCGTAAAGTTTTCCTCACCTGCACGGCTCTATACAAGTTTTCCTCTTCGTAAAATGGGATGCAGGAATATTGGAGCTAGCTTTGTTTAAGTACATTTTAGTAGGTAAGCTTTCACTCGTCTCGTTGTAAACTGCCAAATTTTGGCAAGTGATCTAGATATCAGGTCTAATTTCTTCGACCCAAAAAATAAAAGGTTTCAGGTCGAATGTCTTTAACTTATATTTAATATGATTATAATTTATTATTAGTGAAAAAAATACTATTAAGGGATTATTTGGATTGGATAGAAGAGTTAAATAAAATTAGGAAAGAATGTGTGCCAACTTGGTCTGCCCTGTGCTAATTTTCACTTTCAAGCATTGCACTACTACTTAGATAGGGGTGGAGGTTTAAGTCAACAAGAGAAATCAGCGACGAGGCTGAAAACAAAAAATGTATGGATTAATTGACATAGTTTTTTTTTTTTGAGATAAATGACATGTTAC
>Glyma20g23590.2 sequence type=CDS gene model=Glyma20g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCTTCTTCGGAGAATTATTGCTGCATGTCCTCAATCAAAGAGGATGTTCAGCTCTTCTGTTACCCATGGCTATGAAAGTGCTATTCAAGAACTCAACAAGGAAATGGAATCGGTATTCGGTGAACCTCCTACAAATGGACTAGCTAGCTCTGCAAGCAATAGTCGGTTGAACAATGAATCCCAGCTGTCATCTCCAAACACAGGTGAAAGTTCTTTTGAATTGACTCATACTGGCGAATCAGGGGAAGCTCAAATGGTAGATGTGTCTCCAAAAGAAAGCAGTAAAAGAACTGCCATTGCTGTTTGCAAGGTAATTCTTGGAAAGAAGGTGTTTGATTTGGTCTTGGCCAATCAAATGGCGAAAGGAGATGTGCTTACTGTAGCGAAAATTGCGGGCATAACCGCAGCAAAGCAAACTAGCAACCTTATTCCGTTGTGCCATAATATAAGCCTTTCACACGTGCAAGTGGACTTGAGATTGAATCATGAGGACTTCAGTGTAACAATAGAAGGGGAAGCTGCATCAACCGGTAAAACCGGGGTTGAGATGGAAGCAATGACAGCAGTCTCTATTGCAGGCTTAACCGTGTATGATATGTGTAAGGCTGCTTCAAAAGATATAGCCATTACAGATGTAAGACTTATGCATAAATCTGGTGGAAAAAGTGGAGAGTATTGGTGGACACAATGA >Glyma20g23590.3 sequence type=CDS gene model=Glyma20g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCTTCTTCGGAGAATTATTGCTGCATGTCCTCAATCAAAGAGGATGTTCAGCTCTTCTGTTACCCATGGCTATGAAAGTGCTATTCAAGAACTCAACAAGGAAATGGAATCGGTATTCGGTGAACCTCCTACAAATGGACTAGCTAGCTCTGCAAGCAATAGTCGGTTGAACAATGAATCCCAGCTGTCATCTCCAAACACAGGTGAAAGTTCTTTTGAATTGACTCATACTGGCGAATCAGGGGAAGCTCAAATGGTAGATGTGTCTCCAAAAGAAAGCAGTAAAAGAACTGCCATTGCTGTTTGCAAGGTAATTCTTGGAAAGAAGGTGTTTGATTTGGTCTTGGCCAATCAAATGGCGAAAGGAGATGTGCTTACTGTAGCGAAAATTGCGGGCATAACCGCAGCAAAGCAAACTAGCAACCTTATTCCGTTGTGCCATAATATAAGCCTTTCACACGTGCAAGTGGACTTGAGATTGAATCATGAGGACTTCAGTGTAACAATAGAAGGGGAAGCTGCATCAACCGGTAAAACCGGGGTTGAGATGGAAGCAATGACAGCAGTCTCTATTGCAGGCTTAACCGTGTATGATATGTGTAAGGCTGCTTCAAAAGATATAGCCATTACAGATGTAAGACTTATGCATAAATCTGGTGGAAAAAGTGGAGAGTATTGGTGGACACAATGA
>Glyma20g23590.2 sequence type=predicted peptide gene model=Glyma20g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLLRRIIAACPQSKRMFSSSVTHGYESAIQELNKEMESVFGEPPTNGLASSASNSRLNNESQLSSPNTGESSFELTHTGESGEAQMVDVSPKESSKRTAIAVCKVILGKKVFDLVLANQMAKGDVLTVAKIAGITAAKQTSNLIPLCHNISLSHVQVDLRLNHEDFSVTIEGEAASTGKTGVEMEAMTAVSIAGLTVYDMCKAASKDIAITDVRLMHKSGGKSGEYWWTQ* >Glyma20g23590.3 sequence type=predicted peptide gene model=Glyma20g23590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLLRRIIAACPQSKRMFSSSVTHGYESAIQELNKEMESVFGEPPTNGLASSASNSRLNNESQLSSPNTGESSFELTHTGESGEAQMVDVSPKESSKRTAIAVCKVILGKKVFDLVLANQMAKGDVLTVAKIAGITAAKQTSNLIPLCHNISLSHVQVDLRLNHEDFSVTIEGEAASTGKTGVEMEAMTAVSIAGLTVYDMCKAASKDIAITDVRLMHKSGGKSGEYWWTQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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