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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19970 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:6959644-6961367 FORWARD LENGTH=434 | SoyBase | E_val: 1.00E-176 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2521 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12265 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05705 | PFAM | Eukaryotic protein of unknown function (DUF829) | JGI | ISS | |
| UniRef100_I1NF49 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF49_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LHE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3g19970/MZE19_2 n=1 Tax=Arabidopsis thaliana RepID=Q9LHE8_ARATH | SoyBase | E_val: 7.00E-174 | ISS |
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Glyma20g23580 not represented in the dataset |
Glyma20g23580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g102600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23580.2 sequence type=transcript gene model=Glyma20g23580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTCGTTTTTCTTTTCTCCGTTTCAAAAAATTCAATTAACTTTCGGTTGCAGAGGAGGGTTTAAATTCGATACCCAATTTTATCATAAAAGGAATAATCTTAGGGAGGAGTCGGCGTGTTCACACTTCCAACCCAATCGGGCTGTCAAAACGACGACGTTGACAGCCCGGTTCTCTGGAGATAGACAGATAGATATAGGTACATTCCCAGTTTCAGGTCTGGAATTTTGATTCTAGATAAGGACAAGGGTTGCTACTTGTTGGTGTTGTGCTGTAGTATTGGTTTGACAAGCTTTTGCGTTGAGTTGAGTTGGGTTGAGTTTAGTATCTGCAATGAGTTCGTTTTCTGGAGCCATTCAAAGACCTCTGGTGGCGGCTGCCGCAGTTGCTGTTGCTTCTTTCTCTGCTGATCTCTCCGATAAATTGCCATCACGTGATTGTTCTACCTCCGATTTGGCACATTCTACTCCTTGTAGCAACATACAAGAATCAGATTCATCCTGGGTTTCTCATATTTCGGACTCTAAACTTGCTAACCTATCTTTTGTGACCCAGATTCCGGTGCCTGTGCCTAATGTTCAATTCCGGGTACCGAGTTTGGGACAGAATTGTGTTTCAAATTTGTACCATTCTTCGGTTGCTTCATCACCACTTCTTCGGAATTTGTATCACTCTGCTGACTTGCCTAGAGTCTCGAGGTCTGCTGCATATTCCCATGGTATCTCCAATTCAACTTCTGAGGCTGAGGTCATGTATAAATGGCATTTACCCGAACTGAATGCTTTGGATGATTCTAGTTGTTCATTGACAAAGTCAAGGACAGTGGTGGTCTTGCTGGGATGGTTGGGAGCAAGGCAGAAACACTTGAAGAAGTATGCGGAATGGTACACTTTAAGGGGGTTTCATGTGGTTACCTTCACGTTTCCAATGGGGGAGGTCCTGAGTTATCAGCCGGGTGGAAAAGCGGAGCAAAATGTTCATTTGCTTGTGGACCACTTGGCTGAGTGGTTAGAAGGGGAAAGTGATAAGAATCTTGTCTTTCATACTTTCAGCAACACTGGATGGTTAACATATGGTGTTATTCTTGAACATTTTCAAAACCAGGATCCAACTATCACGGAAAGGATTAAGGGATGCATTGTAGACTCTGCACCTGTTGCGTACCCTGACCCACAGGTCTGGGCCTCAGGTTTCTCTGCTGCATTTCTCAAGAAGAATAGTGTGGCTACAAAAGGACGTGTTTTTTCCGATCAATCTGGCATTAAAGTATCAATTGGCAGTGAAGATGATTTAGGGCTCAAACCTGCTCTAACAGAAGCAGCTTTACTACTAATTCTAAAGAAATTTTTTGAGATCATTCTGGATCTTCCTTCAGTGAACAGGAGGCTCTCTGATGTTATGAGCATGTTATCATCAAAACAACCCAGCTGTCCACAGTTATACATGTATAGCTCTGCTGACAGGGTTATTCCTGCTGATTCAGTGGAATCATTTGTAGAGGCTCAGCGCAGGGCTGGACATGATGTGAGGGCATGCAATTTTGTCTCCTCACCCCATGTTGACCACTTTAGGAATGACCCAAGATTGTATACATCTCAGCTCAGTCAGTTTTTGGAGGAGTGTGTTCTTAGCCGTTGTAAATCTTACTAATTCTTTACATTCCTTGGCTTACTCATACACCATATAGTTCATTCATTTTGATTTTTGAAAGCAGCCATTCCATTAATGGATGTTGCCATGGTGGTTAGGACTTTATGAAAAGTCAACCACCTCAAGGGGATTACACAATTGTTCCCTCACAGGTTATAATTGATTCATTGACATATTGATAGTGCAAATGAAAGATATGTTACACAATTGTTACCTGACAGCTTATAATTGATCCCTCGATATATTGATAGTGCAAATGAAAGATTTTGCAACTTTCTTCAATTGATTTATCTTGCTAG
>Glyma20g23580.1 sequence type=CDS gene model=Glyma20g23580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCGTTTTCTGGAGCCATTCAAAGACCTCTGGTGGCGGCTGCCGCAGTTGCTGTTGCTTCTTTCTCTGCTGATCTCTCCGATAAATTGCCATCACGTGATTGTTCTACCTCCGATTTGGCACATTCTACTCCTTGTAGCAACATACAAGAATCAGATTCATCCTGGGTTTCTCATATTTCGGACTCTAAACTTGCTAACCTATCTTTTGTGACCCAGATTCCGGTGCCTGTGCCTAATGTTCAATTCCGGGTACCGAGTTTGGGACAGAATTGTGTTTCAAATTTGTACCATTCTTCGGTTGCTTCATCACCACTTCTTCGGAATTTGTATCACTCTGCTGACTTGCCTAGAGTCTCGAGGTCTGCTGCATATTCCCATGGTATCTCCAATTCAACTTCTGAGGCTGAGGTCATGTATAAATGGCATTTACCCGAACTGAATGCTTTGGATGATTCTAGTTGTTCATTGACAAAGTCAAGGACAGTGGTGGTCTTGCTGGGATGGTTGGGAGCAAGGCAGAAACACTTGAAGAAGTATGCGGAATGGTACACTTTAAGGGGGTTTCATGTGGTTACCTTCACGTTTCCAATGGGGGAGGTCCTGAGTTATCAGCCGGGTGGAAAAGCGGAGCAAAATGTTCATTTGCTTGTGGACCACTTGGCTGAGTGGTTAGAAGGGGAAAGTGATAAGAATCTTGTCTTTCATACTTTCAGCAACACTGGATGGTTAACATATGGTGTTATTCTTGAACATTTTCAAAACCAGGATCCAACTATCACGGAAAGGATTAAGGGATGCATTGTAGACTCTGCACCTGTTGCGTACCCTGACCCACAGGTCTGGGCCTCAGGTTTCTCTGCTGCATTTCTCAAGAAGAATAGTGTGGCTACAAAAGGACGTGTTTTTTCCGATCAATCTGGCATTAAAGTATCAATTGGCAGTGAAGATGATTTAGGGCTCAAACCTGCTCTAACAGAAGCAGCTTTACTACTAATTCTAAAGAAATTTTTTGAGATCATTCTGGATCTTCCTTCAGTGAACAGGAGGCTCTCTGATGTTATGAGCATGTTATCATCAAAACAACCCAGCTGTCCACAGTTATACATGTATAGCTCTGCTGACAGGGTTATTCCTGCTGATTCAGTGGAATCATTTGTAGAGGCTCAGCGCAGGGCTGGACATGATGTGAGGGCATGCAATTTTGTCTCCTCACCCCATGTTGACCACTTTAGGAATGACCCAAGATTGTATACATCTCAGCTCAGTCAGTTTTTGGAGGAGTGTGTTCTTAGCCGTTGTAAATCTTACTAA >Glyma20g23580.2 sequence type=CDS gene model=Glyma20g23580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCGTTTTCTGGAGCCATTCAAAGACCTCTGGTGGCGGCTGCCGCAGTTGCTGTTGCTTCTTTCTCTGCTGATCTCTCCGATAAATTGCCATCACGTGATTGTTCTACCTCCGATTTGGCACATTCTACTCCTTGTAGCAACATACAAGAATCAGATTCATCCTGGGTTTCTCATATTTCGGACTCTAAACTTGCTAACCTATCTTTTGTGACCCAGATTCCGGTGCCTGTGCCTAATGTTCAATTCCGGGTACCGAGTTTGGGACAGAATTGTGTTTCAAATTTGTACCATTCTTCGGTTGCTTCATCACCACTTCTTCGGAATTTGTATCACTCTGCTGACTTGCCTAGAGTCTCGAGGTCTGCTGCATATTCCCATGGTATCTCCAATTCAACTTCTGAGGCTGAGGTCATGTATAAATGGCATTTACCCGAACTGAATGCTTTGGATGATTCTAGTTGTTCATTGACAAAGTCAAGGACAGTGGTGGTCTTGCTGGGATGGTTGGGAGCAAGGCAGAAACACTTGAAGAAGTATGCGGAATGGTACACTTTAAGGGGGTTTCATGTGGTTACCTTCACGTTTCCAATGGGGGAGGTCCTGAGTTATCAGCCGGGTGGAAAAGCGGAGCAAAATGTTCATTTGCTTGTGGACCACTTGGCTGAGTGGTTAGAAGGGGAAAGTGATAAGAATCTTGTCTTTCATACTTTCAGCAACACTGGATGGTTAACATATGGTGTTATTCTTGAACATTTTCAAAACCAGGATCCAACTATCACGGAAAGGATTAAGGGATGCATTGTAGACTCTGCACCTGTTGCGTACCCTGACCCACAGGTCTGGGCCTCAGGTTTCTCTGCTGCATTTCTCAAGAAGAATAGTGTGGCTACAAAAGGACGTGTTTTTTCCGATCAATCTGGCATTAAAGTATCAATTGGCAGTGAAGATGATTTAGGGCTCAAACCTGCTCTAACAGAAGCAGCTTTACTACTAATTCTAAAGAAATTTTTTGAGATCATTCTGGATCTTCCTTCAGTGAACAGGAGGCTCTCTGATGTTATGAGCATGTTATCATCAAAACAACCCAGCTGTCCACAGTTATACATGTATAGCTCTGCTGACAGGGTTATTCCTGCTGATTCAGTGGAATCATTTGTAGAGGCTCAGCGCAGGGCTGGACATGATGTGAGGGCATGCAATTTTGTCTCCTCACCCCATGTTGACCACTTTAGGAATGACCCAAGATTGTATACATCTCAGCTCAGTCAGTTTTTGGAGGAGTGTGTTCTTAGCCGTTGTAAATCTTACTAA
>Glyma20g23580.1 sequence type=predicted peptide gene model=Glyma20g23580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFSGAIQRPLVAAAAVAVASFSADLSDKLPSRDCSTSDLAHSTPCSNIQESDSSWVSHISDSKLANLSFVTQIPVPVPNVQFRVPSLGQNCVSNLYHSSVASSPLLRNLYHSADLPRVSRSAAYSHGISNSTSEAEVMYKWHLPELNALDDSSCSLTKSRTVVVLLGWLGARQKHLKKYAEWYTLRGFHVVTFTFPMGEVLSYQPGGKAEQNVHLLVDHLAEWLEGESDKNLVFHTFSNTGWLTYGVILEHFQNQDPTITERIKGCIVDSAPVAYPDPQVWASGFSAAFLKKNSVATKGRVFSDQSGIKVSIGSEDDLGLKPALTEAALLLILKKFFEIILDLPSVNRRLSDVMSMLSSKQPSCPQLYMYSSADRVIPADSVESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPRLYTSQLSQFLEECVLSRCKSY* >Glyma20g23580.2 sequence type=predicted peptide gene model=Glyma20g23580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFSGAIQRPLVAAAAVAVASFSADLSDKLPSRDCSTSDLAHSTPCSNIQESDSSWVSHISDSKLANLSFVTQIPVPVPNVQFRVPSLGQNCVSNLYHSSVASSPLLRNLYHSADLPRVSRSAAYSHGISNSTSEAEVMYKWHLPELNALDDSSCSLTKSRTVVVLLGWLGARQKHLKKYAEWYTLRGFHVVTFTFPMGEVLSYQPGGKAEQNVHLLVDHLAEWLEGESDKNLVFHTFSNTGWLTYGVILEHFQNQDPTITERIKGCIVDSAPVAYPDPQVWASGFSAAFLKKNSVATKGRVFSDQSGIKVSIGSEDDLGLKPALTEAALLLILKKFFEIILDLPSVNRRLSDVMSMLSSKQPSCPQLYMYSSADRVIPADSVESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPRLYTSQLSQFLEECVLSRCKSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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