Glyma20g23580 - SoyBase

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Report for Sequence Feature Glyma20g23580

Feature Type:	gene_model
Chromosome:	Gm20
Start:	33414049
stop:	33417358
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g23580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19970	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:6959644-6961367 FORWARD LENGTH=434	SoyBase	E_val: 1.00E-176	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2521	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12265	Panther	UNCHARACTERIZED	JGI		ISS
PF05705	PFAM	Eukaryotic protein of unknown function (DUF829)	JGI		ISS
UniRef100_I1NF49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF49_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LHE8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g19970/MZE19_2 n=1 Tax=Arabidopsis thaliana RepID=Q9LHE8_ARATH	SoyBase	E_val: 7.00E-174	ISS

Expression Patterns of Glyma20g23580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g23580 not represented in the dataset	Glyma20g23580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g23580

Paralog	Evidence	Comments
Glyma10g43250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g23580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g102600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g23580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g23580

Limit To All Plant Sequences

>Glyma20g23580.2   sequence type=transcript   gene model=Glyma20g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCGTTTTTCTTTTCTCCGTTTCAAAAAATTCAATTAACTTTCGGTTGCAGAGGAGGGTTTAAATTCGATACCCAATTTTATCATAAAAGGAATAATCTTAGGGAGGAGTCGGCGTGTTCACACTTCCAACCCAATCGGGCTGTCAAAACGACGACGTTGACAGCCCGGTTCTCTGGAGATAGACAGATAGATATAGGTACATTCCCAGTTTCAGGTCTGGAATTTTGATTCTAGATAAGGACAAGGGTTGCTACTTGTTGGTGTTGTGCTGTAGTATTGGTTTGACAAGCTTTTGCGTTGAGTTGAGTTGGGTTGAGTTTAGTATCTGCAATGAGTTCGTTTTCTGGAGCCATTCAAAGACCTCTGGTGGCGGCTGCCGCAGTTGCTGTTGCTTCTTTCTCTGCTGATCTCTCCGATAAATTGCCATCACGTGATTGTTCTACCTCCGATTTGGCACATTCTACTCCTTGTAGCAACATACAAGAATCAGATTCATCCTGGGTTTCTCATATTTCGGACTCTAAACTTGCTAACCTATCTTTTGTGACCCAGATTCCGGTGCCTGTGCCTAATGTTCAATTCCGGGTACCGAGTTTGGGACAGAATTGTGTTTCAAATTTGTACCATTCTTCGGTTGCTTCATCACCACTTCTTCGGAATTTGTATCACTCTGCTGACTTGCCTAGAGTCTCGAGGTCTGCTGCATATTCCCATGGTATCTCCAATTCAACTTCTGAGGCTGAGGTCATGTATAAATGGCATTTACCCGAACTGAATGCTTTGGATGATTCTAGTTGTTCATTGACAAAGTCAAGGACAGTGGTGGTCTTGCTGGGATGGTTGGGAGCAAGGCAGAAACACTTGAAGAAGTATGCGGAATGGTACACTTTAAGGGGGTTTCATGTGGTTACCTTCACGTTTCCAATGGGGGAGGTCCTGAGTTATCAGCCGGGTGGAAAAGCGGAGCAAAATGTTCATTTGCTTGTGGACCACTTGGCTGAGTGGTTAGAAGGGGAAAGTGATAAGAATCTTGTCTTTCATACTTTCAGCAACACTGGATGGTTAACATATGGTGTTATTCTTGAACATTTTCAAAACCAGGATCCAACTATCACGGAAAGGATTAAGGGATGCATTGTAGACTCTGCACCTGTTGCGTACCCTGACCCACAGGTCTGGGCCTCAGGTTTCTCTGCTGCATTTCTCAAGAAGAATAGTGTGGCTACAAAAGGACGTGTTTTTTCCGATCAATCTGGCATTAAAGTATCAATTGGCAGTGAAGATGATTTAGGGCTCAAACCTGCTCTAACAGAAGCAGCTTTACTACTAATTCTAAAGAAATTTTTTGAGATCATTCTGGATCTTCCTTCAGTGAACAGGAGGCTCTCTGATGTTATGAGCATGTTATCATCAAAACAACCCAGCTGTCCACAGTTATACATGTATAGCTCTGCTGACAGGGTTATTCCTGCTGATTCAGTGGAATCATTTGTAGAGGCTCAGCGCAGGGCTGGACATGATGTGAGGGCATGCAATTTTGTCTCCTCACCCCATGTTGACCACTTTAGGAATGACCCAAGATTGTATACATCTCAGCTCAGTCAGTTTTTGGAGGAGTGTGTTCTTAGCCGTTGTAAATCTTACTAATTCTTTACATTCCTTGGCTTACTCATACACCATATAGTTCATTCATTTTGATTTTTGAAAGCAGCCATTCCATTAATGGATGTTGCCATGGTGGTTAGGACTTTATGAAAAGTCAACCACCTCAAGGGGATTACACAATTGTTCCCTCACAGGTTATAATTGATTCATTGACATATTGATAGTGCAAATGAAAGATATGTTACACAATTGTTACCTGACAGCTTATAATTGATCCCTCGATATATTGATAGTGCAAATGAAAGATTTTGCAACTTTCTTCAATTGATTTATCTTGCTAG

Coding sequences of Glyma20g23580

Limit To All Plant Sequences

>Glyma20g23580.1   sequence type=CDS   gene model=Glyma20g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGTTTTCTGGAGCCATTCAAAGACCTCTGGTGGCGGCTGCCGCAGTTGCTGTTGCTTCTTTCTCTGCTGATCTCTCCGATAAATTGCCATCACGTGATTGTTCTACCTCCGATTTGGCACATTCTACTCCTTGTAGCAACATACAAGAATCAGATTCATCCTGGGTTTCTCATATTTCGGACTCTAAACTTGCTAACCTATCTTTTGTGACCCAGATTCCGGTGCCTGTGCCTAATGTTCAATTCCGGGTACCGAGTTTGGGACAGAATTGTGTTTCAAATTTGTACCATTCTTCGGTTGCTTCATCACCACTTCTTCGGAATTTGTATCACTCTGCTGACTTGCCTAGAGTCTCGAGGTCTGCTGCATATTCCCATGGTATCTCCAATTCAACTTCTGAGGCTGAGGTCATGTATAAATGGCATTTACCCGAACTGAATGCTTTGGATGATTCTAGTTGTTCATTGACAAAGTCAAGGACAGTGGTGGTCTTGCTGGGATGGTTGGGAGCAAGGCAGAAACACTTGAAGAAGTATGCGGAATGGTACACTTTAAGGGGGTTTCATGTGGTTACCTTCACGTTTCCAATGGGGGAGGTCCTGAGTTATCAGCCGGGTGGAAAAGCGGAGCAAAATGTTCATTTGCTTGTGGACCACTTGGCTGAGTGGTTAGAAGGGGAAAGTGATAAGAATCTTGTCTTTCATACTTTCAGCAACACTGGATGGTTAACATATGGTGTTATTCTTGAACATTTTCAAAACCAGGATCCAACTATCACGGAAAGGATTAAGGGATGCATTGTAGACTCTGCACCTGTTGCGTACCCTGACCCACAGGTCTGGGCCTCAGGTTTCTCTGCTGCATTTCTCAAGAAGAATAGTGTGGCTACAAAAGGACGTGTTTTTTCCGATCAATCTGGCATTAAAGTATCAATTGGCAGTGAAGATGATTTAGGGCTCAAACCTGCTCTAACAGAAGCAGCTTTACTACTAATTCTAAAGAAATTTTTTGAGATCATTCTGGATCTTCCTTCAGTGAACAGGAGGCTCTCTGATGTTATGAGCATGTTATCATCAAAACAACCCAGCTGTCCACAGTTATACATGTATAGCTCTGCTGACAGGGTTATTCCTGCTGATTCAGTGGAATCATTTGTAGAGGCTCAGCGCAGGGCTGGACATGATGTGAGGGCATGCAATTTTGTCTCCTCACCCCATGTTGACCACTTTAGGAATGACCCAAGATTGTATACATCTCAGCTCAGTCAGTTTTTGGAGGAGTGTGTTCTTAGCCGTTGTAAATCTTACTAA

>Glyma20g23580.2   sequence type=CDS   gene model=Glyma20g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGTTTTCTGGAGCCATTCAAAGACCTCTGGTGGCGGCTGCCGCAGTTGCTGTTGCTTCTTTCTCTGCTGATCTCTCCGATAAATTGCCATCACGTGATTGTTCTACCTCCGATTTGGCACATTCTACTCCTTGTAGCAACATACAAGAATCAGATTCATCCTGGGTTTCTCATATTTCGGACTCTAAACTTGCTAACCTATCTTTTGTGACCCAGATTCCGGTGCCTGTGCCTAATGTTCAATTCCGGGTACCGAGTTTGGGACAGAATTGTGTTTCAAATTTGTACCATTCTTCGGTTGCTTCATCACCACTTCTTCGGAATTTGTATCACTCTGCTGACTTGCCTAGAGTCTCGAGGTCTGCTGCATATTCCCATGGTATCTCCAATTCAACTTCTGAGGCTGAGGTCATGTATAAATGGCATTTACCCGAACTGAATGCTTTGGATGATTCTAGTTGTTCATTGACAAAGTCAAGGACAGTGGTGGTCTTGCTGGGATGGTTGGGAGCAAGGCAGAAACACTTGAAGAAGTATGCGGAATGGTACACTTTAAGGGGGTTTCATGTGGTTACCTTCACGTTTCCAATGGGGGAGGTCCTGAGTTATCAGCCGGGTGGAAAAGCGGAGCAAAATGTTCATTTGCTTGTGGACCACTTGGCTGAGTGGTTAGAAGGGGAAAGTGATAAGAATCTTGTCTTTCATACTTTCAGCAACACTGGATGGTTAACATATGGTGTTATTCTTGAACATTTTCAAAACCAGGATCCAACTATCACGGAAAGGATTAAGGGATGCATTGTAGACTCTGCACCTGTTGCGTACCCTGACCCACAGGTCTGGGCCTCAGGTTTCTCTGCTGCATTTCTCAAGAAGAATAGTGTGGCTACAAAAGGACGTGTTTTTTCCGATCAATCTGGCATTAAAGTATCAATTGGCAGTGAAGATGATTTAGGGCTCAAACCTGCTCTAACAGAAGCAGCTTTACTACTAATTCTAAAGAAATTTTTTGAGATCATTCTGGATCTTCCTTCAGTGAACAGGAGGCTCTCTGATGTTATGAGCATGTTATCATCAAAACAACCCAGCTGTCCACAGTTATACATGTATAGCTCTGCTGACAGGGTTATTCCTGCTGATTCAGTGGAATCATTTGTAGAGGCTCAGCGCAGGGCTGGACATGATGTGAGGGCATGCAATTTTGTCTCCTCACCCCATGTTGACCACTTTAGGAATGACCCAAGATTGTATACATCTCAGCTCAGTCAGTTTTTGGAGGAGTGTGTTCTTAGCCGTTGTAAATCTTACTAA

Predicted protein sequences of Glyma20g23580

Limit To All Plant Sequences

>Glyma20g23580.1   sequence type=predicted peptide   gene model=Glyma20g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFSGAIQRPLVAAAAVAVASFSADLSDKLPSRDCSTSDLAHSTPCSNIQESDSSWVSHISDSKLANLSFVTQIPVPVPNVQFRVPSLGQNCVSNLYHSSVASSPLLRNLYHSADLPRVSRSAAYSHGISNSTSEAEVMYKWHLPELNALDDSSCSLTKSRTVVVLLGWLGARQKHLKKYAEWYTLRGFHVVTFTFPMGEVLSYQPGGKAEQNVHLLVDHLAEWLEGESDKNLVFHTFSNTGWLTYGVILEHFQNQDPTITERIKGCIVDSAPVAYPDPQVWASGFSAAFLKKNSVATKGRVFSDQSGIKVSIGSEDDLGLKPALTEAALLLILKKFFEIILDLPSVNRRLSDVMSMLSSKQPSCPQLYMYSSADRVIPADSVESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPRLYTSQLSQFLEECVLSRCKSY*

>Glyma20g23580.2   sequence type=predicted peptide   gene model=Glyma20g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFSGAIQRPLVAAAAVAVASFSADLSDKLPSRDCSTSDLAHSTPCSNIQESDSSWVSHISDSKLANLSFVTQIPVPVPNVQFRVPSLGQNCVSNLYHSSVASSPLLRNLYHSADLPRVSRSAAYSHGISNSTSEAEVMYKWHLPELNALDDSSCSLTKSRTVVVLLGWLGARQKHLKKYAEWYTLRGFHVVTFTFPMGEVLSYQPGGKAEQNVHLLVDHLAEWLEGESDKNLVFHTFSNTGWLTYGVILEHFQNQDPTITERIKGCIVDSAPVAYPDPQVWASGFSAAFLKKNSVATKGRVFSDQSGIKVSIGSEDDLGLKPALTEAALLLILKKFFEIILDLPSVNRRLSDVMSMLSSKQPSCPQLYMYSSADRVIPADSVESFVEAQRRAGHDVRACNFVSSPHVDHFRNDPRLYTSQLSQFLEECVLSRCKSY*

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