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Report for Sequence Feature Glyma20g23496

Feature Type:gene_model
Chromosome:Gm20
Start:33343885
stop:33344913
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g23496
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16820AT Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related | chr1:5757199-5758464 REVERSE LENGTH=93 SoyBaseE_val: 3.00E-13ISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
UniRef100_F4I600UniRef Annotation by Michelle Graham. Best UniRef hit: V-ATPase-related protein n=2 Tax=Arabidopsis thaliana RepID=F4I600_ARATH SoyBaseE_val: 2.00E-10ISS
UniRef100_Q9SVZ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9SVZ1_ARATH SoyBaseE_val: 3.00E-08ISS

Expression Patterns of Glyma20g23496
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g23496 not represented in the dataset
Glyma20g23496 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g23496 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g101900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g23496
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g23496
>Glyma20g23496.1   sequence type=CDS   gene model=Glyma20g23496   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGTGCCTGGATGGATGGATACCTTCCACAAAAGTAGTGTGGCCCTTAGCACTGCCAGCCAATTTGCCACAGAATACATATAGCTTGGATTCTGCAACAAATAAGGCATCAAATTGTGAACTCTTGCATTCACAACGTGAAATGCTAGCAGCTAAGTCTGCAACTCAGCTTATATGA
Predicted protein sequences of Glyma20g23496
>Glyma20g23496.1   sequence type=predicted peptide   gene model=Glyma20g23496   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHISDIKLIRTDTTLDLSQKAEKGMCLDGWIPSTKVVWPLALPANLPQNTYSLDSATNKASNCELLHSQREMLAAKSATQLI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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