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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08580 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding EF hand family protein | chr5:2780976-2782961 REVERSE LENGTH=391 | SoyBase | E_val: 0 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG4223 | KOG | Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) | JGI | ISS | |
| PTHR10827 | Panther | CALMODULIN RELATED CALCIUM BINDING PROTEIN | JGI | ISS | |
| PTHR10827:SF13 | Panther | RETICULOCALBIN | JGI | ISS | |
| PF10591 | PFAM | Secreted protein acidic and rich in cysteine Ca binding region | JGI | ISS | |
| UniRef100_B9RGH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Reticulocalbin-2, putative n=1 Tax=Ricinus communis RepID=B9RGH6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001CAB6B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001CAB6B4 related cluster n=1 Tax=unknown RepID=UPI0001CAB6B4 | SoyBase | E_val: 0 | ISS |
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Glyma20g23490 not represented in the dataset |
Glyma20g23490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g101700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23490.1 sequence type=CDS gene model=Glyma20g23490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGCGTCGATTTTCATTTACATACTCGTCGCAGCGGCGCTTCTCATATTCCTCTCCCATTCCCCGGATAAGCACTCCGGCCACCGCCACCGCCGCCTCAAGCTGCGCTCCAACTTCACCCTCGCCCCCTCGCGCCACCACGCCGTCGCCTTCGACCCGCTCGTCGCCGAACTCGAGCGGCACCGCGAAGACAAGGAGTGGGAGAAGAAGATAATCCACCAGGCCCTGCCCGAACTGGAGTCGGACCCGGCCCCGGCCCACGAGTCCCAGCCCGAGTGGGAGGACTTCATGGACGCCGAGGATTACCTCAATGACGAGGACAAGTTTAATGTTACCAACCGGCTCATACTCTTGTTCCCGAAGATCGACGTGGACCCCACCGATTGGTTCGTTACGGAGCACGAGTTGATTCAGTGGAACCTCCAGCAGGCCCAGCGCGAGGTCCTGCATCGCACGCAGAGGGAGATGGAGCTTCACGATAAGAACCACGATGGCTTCGTTTCCTTCTCCGAGTACGATCCTCCCAGTTGGGTTCAAAATGCAGATAATGAATCTTTCGGTTATGATATGGGTTGGTGGAAAGAAGAGCATTTTAATGCATCGGATGCTGATGGAGATGGTGTTCTAAACTTAACTGAATTCAATGACTTTCTGCACCCTGCTGACAGCAAAAATCCCAAGCTTCATCAATGGTTGTGCAAGGAGGAAGTCAGGGAAAGAGATACAGACAGAGATGGGAAGGTCAACTTTAAAGAATTTTTCCATGGGCTATTTGATTTGGTAAGGAACTATGATGAAGAAAGTCACAATGATACACATAATTCTGATAATTCAATGGATGCTCCAGCTAGAGTGTTGTTTGCTCAGCTTGACAAGGATGGGGACGGATACCTGTCAGATGTCGAACTACAGCCCATAATTGGCAAACTCCATCCATCTGAGCATTATTATGCAAAACAACAAGCAGATTATATCATTTCACAGGCAGACGAAGACAAGGATGGTCGTCTTACTTTGACTGAGATGATCGAGAACCCATATGTATTTTATAGTGCTATTTTCAACGATGATGAAGATGATGATAGCGATTATCATGACGAGTTCCGGTAA
>Glyma20g23490.1 sequence type=predicted peptide gene model=Glyma20g23490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKASIFIYILVAAALLIFLSHSPDKHSGHRHRRLKLRSNFTLAPSRHHAVAFDPLVAELERHREDKEWEKKIIHQALPELESDPAPAHESQPEWEDFMDAEDYLNDEDKFNVTNRLILLFPKIDVDPTDWFVTEHELIQWNLQQAQREVLHRTQREMELHDKNHDGFVSFSEYDPPSWVQNADNESFGYDMGWWKEEHFNASDADGDGVLNLTEFNDFLHPADSKNPKLHQWLCKEEVRERDTDRDGKVNFKEFFHGLFDLVRNYDEESHNDTHNSDNSMDAPARVLFAQLDKDGDGYLSDVELQPIIGKLHPSEHYYAKQQADYIISQADEDKDGRLTLTEMIENPYVFYSAIFNDDEDDDSDYHDEFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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