SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17970 | AT | Annotation by Michelle Graham. TAIR10: aluminum-activated, malate transporter 12 | chr4:9975482-9977722 FORWARD LENGTH=560 | SoyBase | E_val: 0 | ISS |
| GO:0010044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to aluminum ion | SoyBase | N/A | ISS |
| GO:0010118 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal movement | SoyBase | N/A | ISS |
| GO:0012505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system | SoyBase | N/A | ISS |
| GO:0008509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG4711 | KOG | Predicted membrane protein | JGI | ISS | |
| PF11744 | PFAM | Aluminium activated malate transporter | JGI | ISS | |
| UniRef100_I1NF39 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NF39_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O49696 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 12 n=2 Tax=Arabidopsis thaliana RepID=ALMTC_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma20g23450 not represented in the dataset |
Glyma20g23450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g101400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23450.2 sequence type=transcript gene model=Glyma20g23450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGATAACTTTTGTTGGAAGTCATCGAAATTCAATATTTGTTTATGTAATCGTTAATTGGACACGTAAACATGTGTTTATGATATCACATGTAATATTTGTCTTATCGAAATAACATCTAGGATCTTGTTTTTAGAAAAATAAAAGTAAAGACCACGTCGTTTCTCCTTTTCCCACACCCTCACCCTCGATCCCCACAAACACTTTCACCTCCGCAAGAAGCTTCAACAAAACGACATCGTCGACTGCGCCGCCGCACCTCAATTACCTCGACTCCGTAGAATCCTCGTCGTTCTCCCGCAACACCAACTCTTGGGACGATCCCTTCGCACCAGCGTCCAGATTCGTGCTCAGATCCACGCTCTCCTCGCTCTAGTCCTCTATCTACCGCCTCCACTCTGAGCGCTTTCTAACCCTCACCGCTCCATCATTGCCAAAACCAACTAGCTCTCCAACCTCCACCACACCACCAAGCTCCTCCAGCACTCCATCAGCGACCGCATGGCCACCGTCAACTCCGAAAAACTCCATCTCGCCAAGGCCGCCTAACTCCAATTCGAGATCCTAATGGTGTAAGAATATTCAACTGTTGCATGAACCGCGAACCCAAAATCGAACCTGCGTCGGGGGTACTGCAAACCGATCAACAAACCCAAACTTGGGAGCTAAAAACCTAGATCTAAAAAATCAGGTTGCAGTTATGGTGCGTGACAGGTTTGGAGAAGCAACCGCAGTCAAAGATGACGAATGCGCGGTCTCGACGGTCCTCTTGTGGTGTGTGGCCTCCATGCGCTCTATGAACTTGGACTCGTTGGAGAAGTCGAGGTAGTCACACCCCACGGCGGCGCATGCGACCATGACGGGCTCGCTGTGGAGGCGGAAAGGGCCCACGAAATTAACGAGGGGAGGAAGGGAGAAAGCGTGTAGAGTTTGGATTTCAAGTTGTTGTTGTTGAGGGGTTGGGGTTGCCTTTCTCAGAGGAGGGGTCAACTTGGATGAAGGCAATATGGAAGGTTGGCAAAGAGGATCCAAGAAGGGTGGTTCATTCTATGAAAGTTGGTACGGCTTTGGTACTAGTTTCTTTGTTGTATCTGTTGGAGCCATTGTTTAATGGGATAGGGAAAAACGCTATGTGGGCTGTCATGACTGTGGTTGTGGTGATGGAGTTCACTGTAGGGGCAACATTGTGCAAAGGACTAAATAGAGGATTGGGGACTCTCTTGGCAGGATCATTGGCATTTCTTATTAAGTATTTTGCAGATGCCCCTGGTCGGATTTTTCAAGCAGTATACATTGGTGTTTCAGTTTTTATGATAGGAGCATTAACTACTTATGTGAGGTTCATTCCCTCTATCAAGAAGAATTATGACTATGGTGTTCTGATCTTTCTTCTCACCTTTAATTTGATAACTGTATCAAGCTACCGCGTTAATGATGTCTGGGACTTTGCAAAAGATCGCATATCCACCATTGCCATAGGATGTGGCCTATGTCTTCTGATGAGCATATTGGTGTTTCCAAACTGGTCAGGGGAAGAGCTCCACAACAACACCATATCAAGGCTCGAAGGCTTAGCCAACTCTATACAAGTCTGTATCACGGGATATTTTTATGATTCTGCAAAACAAGCAACTGAAGGTGATTCATCTGAGAATCCAATTTACGAAGGTTACAAGGCTGTTTTAGACTCCAAAGTAAAAGATGAAACACTGGCGTCACAAGCAAGCTGGGAACCAAGATTCTCAAGATATTGTCACAGAACTCCGTGGCATCAATATACAAGAGTGGGAGCTGCTCTTCGCCAATTCAGTTACACTGTTGTAGCACTACATGGATGTCTACAGTCTGAAATTCAGACACCAAAGTCAATTAGTACCCTGTACAAAGATTCTTGCATCAGACTTGGAGAGGAAGTGTCAAAAGTATTAAGGGAACTGGCCAACAGCATAAGGAACAAACGTCAATTCTCCCCTCAAACACTCTCCAGGAATCTAAAGGATGCATTACAAGACCTTCACAGTGCCTTGAAATCCCAACCACAACTTGTACTAGGCTCGAGGAATGGTCGAACTCAAACCCCTAAAACCGCAGTTCAAGCAGTTCCACATCCACATCCTGACCAAAAGCTTGAAGAGGACACCAAATTCTCATTCTCAAGTGTTAGGAATGGTTCACGTGGATCCGGATGTCAATCCGTAGAGCACTCTCGTGAACTGACAAGGAAGGTTTTAAGGCCACAGATGAGTATGAGTGCCATCATTAGCCTTGAGTTCTCAGAAGCATTACCCTTTGCTGCTTTCACTTCTTTGCTTGTAGAGATGGTGGCTAAACTGGATTATGTTATGGATGAAGTTGATGAGTTGGGCATAATAGCACATTTTGAAGAGTTCCAAGGTGATGAGATTGTCGTGACTTGTGAAAAACCAAACATCAATAAACCTCAGAATGACTTGCCTTCTTATGGAGCAGAGTAGTTAGTATAGAATCCAAATGGAGTACTGGAGCATATTCTTCGTTGCAATTGCTGCTTATCATCCCATGGCATGCATGCATACATACATATATATACATACATTCTAGTGCGTATGTAAAGGAACTTGCTAGTCTTCTTACATGGAGAAGAGTGCACGTAAAATGCTTCCACAATAAGTTACCCTGAATTGCAAAGTGAGCTCCTTGGTTTGTTATGGCTAGCTTACTTTGATTCAGTTACATTACCTATGGAGCCTTGTGCACATGGAAGAGTTAGATATATACATCTTGGTAGATGATTTTACCTTGTGGATTTGAGGATTGCTTGGAGAACAAATCTCACCAATGTAAGTTAAAAATAAATAAAA
>Glyma20g23450.1 sequence type=CDS gene model=Glyma20g23450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTGAGATATATTTATAGCTATGCTCATAAGTTGAACAGATTTCCTGGTTTGGCAAGGAAGGCAATATGGAAGGTTGGCAAAGAGGATCCAAGAAGGGTGGTTCATTCTATGAAAGTTGGTACGGCTTTGGTACTAGTTTCTTTGTTGTATCTGTTGGAGCCATTGTTTAATGGGATAGGGAAAAACGCTATGTGGGCTGTCATGACTGTGGTTGTGGTGATGGAGTTCACTGTAGGGGCAACATTGTGCAAAGGACTAAATAGAGGATTGGGGACTCTCTTGGCAGGATCATTGGCATTTCTTATTAAGTATTTTGCAGATGCCCCTGGTCGGATTTTTCAAGCAGTATACATTGGTGTTTCAGTTTTTATGATAGGAGCATTAACTACTTATGTGAGGTTCATTCCCTCTATCAAGAAGAATTATGACTATGGTGTTCTGATCTTTCTTCTCACCTTTAATTTGATAACTGTATCAAGCTACCGCGTTAATGATGTCTGGGACTTTGCAAAAGATCGCATATCCACCATTGCCATAGGATGTGGCCTATGTCTTCTGATGAGCATATTGGTGTTTCCAAACTGGTCAGGGGAAGAGCTCCACAACAACACCATATCAAGGCTCGAAGGCTTAGCCAACTCTATACAAGTCTGTATCACGGGATATTTTTATGATTCTGCAAAACAAGCAACTGAAGGTGATTCATCTGAGAATCCAATTTACGAAGGTTACAAGGCTGTTTTAGACTCCAAAGTAAAAGATGAAACACTGGCGTCACAAGCAAGCTGGGAACCAAGATTCTCAAGATATTGTCACAGAACTCCGTGGCATCAATATACAAGAGTGGGAGCTGCTCTTCGCCAATTCAGTTACACTGTTGTAGCACTACATGGATGTCTACAGTCTGAAATTCAGACACCAAAGTCAATTAGTACCCTGTACAAAGATTCTTGCATCAGACTTGGAGAGGAAGTGTCAAAAGTATTAAGGGAACTGGCCAACAGCATAAGGAACAAACGTCAATTCTCCCCTCAAACACTCTCCAGGAATCTAAAGGATGCATTACAAGACCTTCACAGTGCCTTGAAATCCCAACCACAACTTGTACTAGGCTCGAGGAATGGTCGAACTCAAACCCCTAAAACCGCAGTTCAAGCAGTTCCACATCCACATCCTGACCAAAAGCTTGAAGAGGACACCAAATTCTCATTCTCAAGTGTTAGGAATGGTTCACGTGGATCCGGATGTCAATCCGTAGAGCACTCTCGTGAACTGACAAGGAAGGTTTTAAGGCCACAGATGAGTATGAGTGCCATCATTAGCCTTGAGTTCTCAGAAGCATTACCCTTTGCTGCTTTCACTTCTTTGCTTGTAGAGATGGTGGCTAAACTGGATTATGTTATGGATGAAGTTGATGAGTTGGGCATAATAGCACATTTTGAAGAGTTCCAAGGTGATGAGATTGTCGTGACTTGTGAAAAACCAAACATCAATAAACCTCAGAATGACTTGCCTTCTTATGGAGCAGAGTAG >Glyma20g23450.2 sequence type=CDS gene model=Glyma20g23450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGCAATATGGAAGGTTGGCAAAGAGGATCCAAGAAGGGTGGTTCATTCTATGAAAGTTGGTACGGCTTTGGTACTAGTTTCTTTGTTGTATCTGTTGGAGCCATTGTTTAATGGGATAGGGAAAAACGCTATGTGGGCTGTCATGACTGTGGTTGTGGTGATGGAGTTCACTGTAGGGGCAACATTGTGCAAAGGACTAAATAGAGGATTGGGGACTCTCTTGGCAGGATCATTGGCATTTCTTATTAAGTATTTTGCAGATGCCCCTGGTCGGATTTTTCAAGCAGTATACATTGGTGTTTCAGTTTTTATGATAGGAGCATTAACTACTTATGTGAGGTTCATTCCCTCTATCAAGAAGAATTATGACTATGGTGTTCTGATCTTTCTTCTCACCTTTAATTTGATAACTGTATCAAGCTACCGCGTTAATGATGTCTGGGACTTTGCAAAAGATCGCATATCCACCATTGCCATAGGATGTGGCCTATGTCTTCTGATGAGCATATTGGTGTTTCCAAACTGGTCAGGGGAAGAGCTCCACAACAACACCATATCAAGGCTCGAAGGCTTAGCCAACTCTATACAAGTCTGTATCACGGGATATTTTTATGATTCTGCAAAACAAGCAACTGAAGGTGATTCATCTGAGAATCCAATTTACGAAGGTTACAAGGCTGTTTTAGACTCCAAAGTAAAAGATGAAACACTGGCGTCACAAGCAAGCTGGGAACCAAGATTCTCAAGATATTGTCACAGAACTCCGTGGCATCAATATACAAGAGTGGGAGCTGCTCTTCGCCAATTCAGTTACACTGTTGTAGCACTACATGGATGTCTACAGTCTGAAATTCAGACACCAAAGTCAATTAGTACCCTGTACAAAGATTCTTGCATCAGACTTGGAGAGGAAGTGTCAAAAGTATTAAGGGAACTGGCCAACAGCATAAGGAACAAACGTCAATTCTCCCCTCAAACACTCTCCAGGAATCTAAAGGATGCATTACAAGACCTTCACAGTGCCTTGAAATCCCAACCACAACTTGTACTAGGCTCGAGGAATGGTCGAACTCAAACCCCTAAAACCGCAGTTCAAGCAGTTCCACATCCACATCCTGACCAAAAGCTTGAAGAGGACACCAAATTCTCATTCTCAAGTGTTAGGAATGGTTCACGTGGATCCGGATGTCAATCCGTAGAGCACTCTCGTGAACTGACAAGGAAGGTTTTAAGGCCACAGATGAGTATGAGTGCCATCATTAGCCTTGAGTTCTCAGAAGCATTACCCTTTGCTGCTTTCACTTCTTTGCTTGTAGAGATGGTGGCTAAACTGGATTATGTTATGGATGAAGTTGATGAGTTGGGCATAATAGCACATTTTGAAGAGTTCCAAGGTGATGAGATTGTCGTGACTTGTGAAAAACCAAACATCAATAAACCTCAGAATGACTTGCCTTCTTATGGAGCAGAGTAG
>Glyma20g23450.1 sequence type=predicted peptide gene model=Glyma20g23450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRYIYSYAHKLNRFPGLARKAIWKVGKEDPRRVVHSMKVGTALVLVSLLYLLEPLFNGIGKNAMWAVMTVVVVMEFTVGATLCKGLNRGLGTLLAGSLAFLIKYFADAPGRIFQAVYIGVSVFMIGALTTYVRFIPSIKKNYDYGVLIFLLTFNLITVSSYRVNDVWDFAKDRISTIAIGCGLCLLMSILVFPNWSGEELHNNTISRLEGLANSIQVCITGYFYDSAKQATEGDSSENPIYEGYKAVLDSKVKDETLASQASWEPRFSRYCHRTPWHQYTRVGAALRQFSYTVVALHGCLQSEIQTPKSISTLYKDSCIRLGEEVSKVLRELANSIRNKRQFSPQTLSRNLKDALQDLHSALKSQPQLVLGSRNGRTQTPKTAVQAVPHPHPDQKLEEDTKFSFSSVRNGSRGSGCQSVEHSRELTRKVLRPQMSMSAIISLEFSEALPFAAFTSLLVEMVAKLDYVMDEVDELGIIAHFEEFQGDEIVVTCEKPNINKPQNDLPSYGAE* >Glyma20g23450.2 sequence type=predicted peptide gene model=Glyma20g23450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAIWKVGKEDPRRVVHSMKVGTALVLVSLLYLLEPLFNGIGKNAMWAVMTVVVVMEFTVGATLCKGLNRGLGTLLAGSLAFLIKYFADAPGRIFQAVYIGVSVFMIGALTTYVRFIPSIKKNYDYGVLIFLLTFNLITVSSYRVNDVWDFAKDRISTIAIGCGLCLLMSILVFPNWSGEELHNNTISRLEGLANSIQVCITGYFYDSAKQATEGDSSENPIYEGYKAVLDSKVKDETLASQASWEPRFSRYCHRTPWHQYTRVGAALRQFSYTVVALHGCLQSEIQTPKSISTLYKDSCIRLGEEVSKVLRELANSIRNKRQFSPQTLSRNLKDALQDLHSALKSQPQLVLGSRNGRTQTPKTAVQAVPHPHPDQKLEEDTKFSFSSVRNGSRGSGCQSVEHSRELTRKVLRPQMSMSAIISLEFSEALPFAAFTSLLVEMVAKLDYVMDEVDELGIIAHFEEFQGDEIVVTCEKPNINKPQNDLPSYGAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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