Glyma20g23310 - SoyBase

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Report for Sequence Feature Glyma20g23310

Feature Type:	gene_model
Chromosome:	Gm20
Start:	33190094
stop:	33197013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g23310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50370	AT	Annotation by Michelle Graham. TAIR10: Calcineurin-like metallo-phosphoesterase superfamily protein \| chr1:18658894-18661672 FORWARD LENGTH=303	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0373	KOG	Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related	JGI		ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF24	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_C6TK28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=C6TK28_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TK28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=C6TK28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g23310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g23310 not represented in the dataset	Glyma20g23310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g23310

Paralog	Evidence	Comments
Glyma10g43464	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g23310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g100200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g23310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g23310

Limit To All Plant Sequences

>Glyma20g23310.2   sequence type=transcript   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGCATAGCCATTAAACTAATGAGGAATTAGCAGCAAAAACATGTACTAATAAAGCAAAAGGCAGGTTGGTATGTGTATGTGTTAGTTTGTTGACTTCTTTCAACCTAACCCATCGTTCGCACGGAGCCGTGGTGGTTCTGGCTCTGTCCTTTTTTCCTTTCTCTCGTTACCAGAACCAGAAGAACCATTTGTGGCCAACATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAAAGAGAAGTTAAATTTTTCACCGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTATAAGTTGGTGCAAATTTTGTTTTGAATTTATTGTAAAATTAGACACTCATGTATTTATGCTTTGCCTTTTAAAGGTGGATTTTATTGGTCACAAGATTACCAATCAAACTATATCTTAGCTCTGGGTCGCACAGATAATTTTATGTTTAAATTTTTATTGAAAAATATTTTTTTTCTTAATTTTTACTACAAAATATCGTTATATGAATAGAATTGTTAGAACGTCTTGGCA

>Glyma20g23310.3   sequence type=transcript   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGCATAGCCATTAAACTAATGAGGAATTAGCAGCAAAAACATGTACTAATAAAGCAAAAGGCAGGTTGGTATGTGTATGTGTTAGTTTGTTGACTTCTTTCAACCTAACCCATCGTTCGCACGGAGCCGTGGTGGTTCTGGCTCTGTCCTTTTTTCCTTTCTCTCGTTACCAGAACCAGAAGAACCATTTGTGGCCAACATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCATGGGGGCCTTTCTCCTGACATTCGAACAATTGATCAGATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTTCAATTCCCCTTTGGAAATTTGCAGGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAAAGAGAAGTTAAATTTTTCACCGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTATAAGTTGGTGCAAATTTTGTTTTGAATTTATTGTAAAATTAGACACTCATGTATTTATGCTTTGCCTTTTAAAGGTGGATTTTATTGGTCACAAGATTACCAATCAAACTATATCTTAGCTCTGGGTCGCACAGATAATTTTATGTTTAAATTTTTATTGAAAAATATTTTTTTTCTTAATTTTTACTACAAAATATCGTTATATGAATAGAATTGTTAGAACGTCTTGGCA

>Glyma20g23310.4   sequence type=transcript   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGCATAGCCATTAAACTAATGAGGAATTAGCAGCAAAAACATGTACTAATAAAGCAAAAGGCAGGTTGGTATGTGTATGTGTTAGTTTGTTGACTTCTTTCAACCTAACCCATCGTTCGCACGGAGCCGTGGTGGTTCTGGCTCTGTCCTTTTTTCCTTTCTCTCGTTACCAGAACCAGAAGAACCATTTGTGGCCAACATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCATGGGGGCCTTTCTCCTGACATTCGAACAATTGATCAGATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGTTTCTTAAATGAATTACAATAATTCTTTTGTTCCCTAAATTTTTAAAATATAATTTTGGACTCGTATAGATATGAAGTCAATTCCCCTTTGGAAATTTGCAGGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAAAGAGAAGTTAAATTTTTCACCGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTATAAGTTGGTGCAAATTTTGTTTTGAATTTATTGTAAAATTAGACACTCATGTATTTATGCTTTGCCTTTTAAAGGTGGATTTTATTGGTCACAAGATTACCAATCAAACTATATCTTAGCTCTGGGTCGCACAGATAATTTTATGTTTAAATTTTTATTGAAAAATATTTTTTTTCTTAATTTTTACTACAAAATATCGTTATATGAATAGAATTGTTAGAACGTCTTGGCA

Coding sequences of Glyma20g23310

Limit To All Plant Sequences

>Glyma20g23310.1   sequence type=CDS   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCATGGGGGCCTTTCTCCTGACATTCGAACAATTGATCAGATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAAAGAGAAGTTAAATTTTTCACCGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTATAA

>Glyma20g23310.2   sequence type=CDS   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAAAGAGAAGTTAAATTTTTCACCGAAACAGAGGAGAACAATCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTATAA

>Glyma20g23310.3   sequence type=CDS   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCATGGGGGCCTTTCTCCTGACATTCGAACAATTGATCAGATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTTCAATTCCCCTTTGGAAATTTGCAGGTATGGTCTGCACCTAA

>Glyma20g23310.4   sequence type=CDS   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGACCAGTGGATCTCCAAGGTCAAAGAGGGCCAGCATCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTAAAAGAGATCCTTATCGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTGACTGTTTGTGGTGATATTCATGGTCAATTCCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCTGAGACAAATTATATTTTTATGGGAGACTTTGTTGATCGAGGTTACAATAGTCTTGAAGTTTTTACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTTTACGTGGAAATCATGAAAGTAGACAATTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGCAATGCCAATGCTTGGCGGTATTGTACAGATGTGTTTGACTATTTAACACTTTCTGCAATTATTGATGGAACTGTGCTTTGTGTTCATGGGGGCCTTTCTCCTGACATTCGAACAATTGATCAGATAAGGGTCATTGACCGGAACTGTGAAATTCCTCATGAGGGTCCTTTCTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCCAGGGTCACTTCGGAGTTCAATCACATAAATAACCTTGATCTTGTTTGTCGAGCGCACCAACTCGTTCAGGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTTGTAACTGTATGTTTCTTAAATGAATTACAATAA

Predicted protein sequences of Glyma20g23310

Limit To All Plant Sequences

>Glyma20g23310.1   sequence type=predicted peptide   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDQWISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIDRNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL*

>Glyma20g23310.2   sequence type=predicted peptide   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDQWISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTIRVIDRNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL*

>Glyma20g23310.3   sequence type=predicted peptide   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDQWISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIDRNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTSIPLWKFAGMVCT*

>Glyma20g23310.4   sequence type=predicted peptide   gene model=Glyma20g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLDQWISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIDRNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVCFLNELQ*

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