SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55410 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017 | SoyBase | E_val: 0 | ISS |
| GO:0006099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0004591 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016624 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| GO:0030976 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG0450 | KOG | 2-oxoglutarate dehydrogenase, E1 subunit | JGI | ISS | |
| PTHR23152 | Panther | 2-OXOGLUTARATE DEHYDROGENASE | JGI | ISS | |
| PF00676 | PFAM | Dehydrogenase E1 component | JGI | ISS | |
| PF02779 | PFAM | Transketolase, pyrimidine binding domain | JGI | ISS | |
| UniRef100_G7KVS0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxoglutarate dehydrogenase-like protein n=1 Tax=Medicago truncatula RepID=G7KVS0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NF12 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF12_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma20g23200 not represented in the dataset |
Glyma20g23200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g43610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g099200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23200.1 sequence type=CDS gene model=Glyma20g23200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGGTTTAGAGTTGCTTCCAGCATAGTAAAGCATGATGCAATTAGGAGAAATCTCTATCGAGGTGCGAAAAGGACCAGCACAGTCCTTCCATCAACAAGTAGAATTAGAAAATTTCACACCACGGTTGTCAAATCCAAAGAGCAAACCGCACCGGTGCCTCGCCCCGTGCCCCTTTCCAAGTTGACTGACAACTTCTTGGATGGGACGAGCAGTGTCTATTTAGAGGAGCTTCAAAGGGCTTGGGAAGCTGATCCAGACAGTGTAGATGAGTCCTGGGACAATTTCTTCAGGAACTTTGTGGGTCAGGCTTCCACATCCCCTGGAATTTCTGGACAAACAATCCAGGAGAGTATGCAATTGCTGTTGCTGGTGAGAGCATACCAGGTTAATGGTCACATGAAAGCCAAGCTAGATCCTCTGGGTCTGGAGGAACGAAAAGTCCCTGATGAGTTAGACCCTGCCTTTTATGGCTTCACTGAGGCTGATCTTGACAGGGAATTCTTTTTGGGTGTGTGGAAGATGTCTGGCTTTTTGTCCGAAAATCGCCCTGTGCAGACTCTTAGGTTCATTTTGTCACGGCTTCAGCAAGCCTACTGTGGGAGCATTGGATACGAGTACATGCACATACCGGACCGTGAAAAATGTAACTGGCTTAGGGACAGGATTGAGACTCCTACACCTACACAGTATAATCGGGAGCGTCGCGAAGTTATCTTTGATAGGCTTGCCTGGAGTACACTTTTTGAAAATTTCTTGGCCACCAAGTGGACTTCGGCAAAGAGGTTTGGGCTTGAAGGGGGAGAGAGTGTTATTCCTGGCATGAAAGAAATGTTTGATCGGGCATCTGATCTTGGGGTCGAGAGCATTGTTATGGGAATGGCACATAGGGGAAGATTGAATGTTTTGGGTAATGTAGTACGGAAGCCACTTCGTCAGATTTTTTGTGAGTTTAGTGGTGGTCAGCCTGCAGACGAAGTTGGGCTCTACACAGGAACTGGTGATGTCAAATATCATTTGGGAACATCTTATGATCGCCCAACCAGGGGTGGGAGGAGGATACATTTATCTTTGGTGGCAAATCCTAGTCACTTGGAAGCAGTCAACCCACTTGTGGTTGGAAAAACTCGAGCAAAGCAATATTACTCCAATGATGTGGACAGAATGAAAAACATGGGGGTTTTGATTCATGGAGATGGTAGTTTTGCTGGACAAGGTGTGGTCTATGAAACCCTTCATCTTAGCGCTCTTCCAAATTACACTACTGGTGGGACTATACACATTGTGTTCAACAATCAAGTTGCATTTACAACTGATCCCAAGTCAGGAAGATCTTCACAATATTGCACTGATGTTGCCAAAGCATTAAATGCTCCAATCTTTCATGTGAATGGTGATGATGTGGAAGCTGTTGTTCATGTCTGTGAACTTGCAGCTGAATGGCGCCAAACTTTCCATTCTGATGTGGTTGTTGACTTCGTGTGTTACCGTCGATTTGGCCACAATGAGATTGATGAACCATCTTTCACACAGCCTAAAATGTATAAGGTCATCCGAAACCATCCATCAGCTCTTGAGATCTATCAGAAAAAACTTTTGGAATCAGGGGAGCTGACACAAGAAGACATTGATAAGATACATAAGAAGGTCACATCAATTTTAAATGATGAATTTTTGGCTAGCAAAGATTATGTTCCAAAACGAAGAGATTGGCTTTCAGCATATTGGTCTGGTTTCAAGTCACCTGAACAGATTTCACGTATCCGGAACACTGGTGTGAAACCAGAGATCTTGAAAAGTGTTGGGAAAGCAATCACAATCTTACCTAAATTTTTTTCTCCTCATAAAGCAGTGAAGAGGATTTATGAACAACGTGCCCAGATGGTTGAAACAGGGGAAGATATTGACTGGGGATTTGCAGAGGCACTTGCCTTTGCCACATTGATAGTTGAGGGTAACCATGTTCGGTTAAGTGGTCAGGATGTTGAAAGAGGAACGTTTAGTCACCGTCATGCTGTAGTTCATGATCAGACAACGGGAGAGATATATTGCCCCCTTGACCATGTGATAATGAATCAAAATGAAGAGATGTTTACTGTTAGCAATAGCTCACTCTCTGAGTTTGGAGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCAAATTCATTGGTGATCTGGGAGGCTCAATTTGGTGATTTTGCTAATGGGGCTCAAGTTATATTTGACAATTTCTTGAGTTCTGGTGAGTCTAAGTGGCTCCGTCAGACTGGGCTTGTAGTGTTACTTCCTCATGGTTATGATGGCCAGGGCCCTGAGCATTCAAGTGGAAGATTGGAACGCTTTCTTCAGATGGCTGATGACCATCCTTATGTTATTCCTGAGATGGATCCTACTCTTCGGAAACAAATTCAGGAATGTAACTGGCAGATTGTGAATGTTACAACTCCAGCAAATTTTTTCCATGTTTTACGGCGGCAGATACATAGAGAATTCCGTAAACCTCTCATTGTGATGTCACCTAAGAACCTGCTTCGTAGTAAGGCTTGTAGATCAAATTTATCGGAGTTCGATGATGTTCAAGGACACCCAGGTTTTGACAAACAGGGCACTAGATTTAAGCGCCTCATAAAAGACCAAAATAACCACTCAGATGTTGAGGAGGGTATCAGACGTTTAGTACTCTGCTCTGGAAAGGTTTACTACGAACTCGATGAACAACGAACAAAGGAAGATGCAAAGGATGTTGCAATATGTAGGGTGGAACAGCTTTGTCCTTTCCCTTATGATCTTGTCCAACGAGAGCTCAAAAGATATCCAAATGCGGAGGTTGTTTGGTGTCAAGAAGAACCAATGAACATGGGTGGATACACTTATATTTTACCCCGACTCATAAGTTCCATGAAGGCTGTAGGTAGGGGAGGTTATGAAGATGTCAAATATGTTGGTCGTGCTCCCTCTGCAGCCACAGCTACTGGTTTCCTCAAGGTTCACCTTAACGAGCAGGCTGAGCTAGTTCAGAAAGCCATTCAACGTGAGCCAATCAATTTCCCTTACTGA
>Glyma20g23200.1 sequence type=predicted peptide gene model=Glyma20g23200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAWFRVASSIVKHDAIRRNLYRGAKRTSTVLPSTSRIRKFHTTVVKSKEQTAPVPRPVPLSKLTDNFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVGQASTSPGISGQTIQESMQLLLLVRAYQVNGHMKAKLDPLGLEERKVPDELDPAFYGFTEADLDREFFLGVWKMSGFLSENRPVQTLRFILSRLQQAYCGSIGYEYMHIPDREKCNWLRDRIETPTPTQYNRERREVIFDRLAWSTLFENFLATKWTSAKRFGLEGGESVIPGMKEMFDRASDLGVESIVMGMAHRGRLNVLGNVVRKPLRQIFCEFSGGQPADEVGLYTGTGDVKYHLGTSYDRPTRGGRRIHLSLVANPSHLEAVNPLVVGKTRAKQYYSNDVDRMKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVFNNQVAFTTDPKSGRSSQYCTDVAKALNAPIFHVNGDDVEAVVHVCELAAEWRQTFHSDVVVDFVCYRRFGHNEIDEPSFTQPKMYKVIRNHPSALEIYQKKLLESGELTQEDIDKIHKKVTSILNDEFLASKDYVPKRRDWLSAYWSGFKSPEQISRIRNTGVKPEILKSVGKAITILPKFFSPHKAVKRIYEQRAQMVETGEDIDWGFAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVVHDQTTGEIYCPLDHVIMNQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVIWEAQFGDFANGAQVIFDNFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSGRLERFLQMADDHPYVIPEMDPTLRKQIQECNWQIVNVTTPANFFHVLRRQIHREFRKPLIVMSPKNLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNNHSDVEEGIRRLVLCSGKVYYELDEQRTKEDAKDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNMGGYTYILPRLISSMKAVGRGGYEDVKYVGRAPSAATATGFLKVHLNEQAELVQKAIQREPINFPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
