SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56345 | AT | Annotation by Michelle Graham. TAIR10: Pseudouridine synthase family protein | chr1:21093409-21094454 REVERSE LENGTH=322 | SoyBase | E_val: 3.00E-110 | ISS |
| GO:0001522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0009982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity | SoyBase | N/A | ISS |
| KOG1919 | KOG | RNA pseudouridylate synthases | JGI | ISS | |
| PTHR10436 | Panther | RIBOSOMAL PSEUDOURIDINE SYNTHASE | JGI | ISS | |
| PF00849 | PFAM | RNA pseudouridylate synthase | JGI | ISS | |
| UniRef100_G7I9H4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lon protease-like protein n=1 Tax=Medicago truncatula RepID=G7I9H4_MEDTR | SoyBase | E_val: 1.00E-129 | ISS |
| UniRef100_I1NF00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NF00_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g23060 not represented in the dataset |
Glyma20g23060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g098200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g23060.2 sequence type=CDS gene model=Glyma20g23060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTCTGTGAACCCCAAACCCTTCTCCGCCGTAGCCGTAGCCATGTCAGGGTCACACTCACAGCAAGCCCAACCAAAATCCCCAATCCCCACAGAGAATTACCCAGTCCCACTGTCCCCTCCTCTCCCCCCAATCTCGAAACAACTGGAACTGAGCAGGGCCATGAGCGCCGCTTCAAACTCCAGCCTCTTCTCCCTCTCCCCCGCCGATATCCTCTACCACGACGACCACCTCATCGCAGTCAACAAGCACCCCGGAATCTACTGCGAGACCCTCCTCTCCTCCCTCGCCTCCCAATCCCACCAGCTCCACCTCGCTAATCGACTCGACCGCGACACCACCGGCGTATTGCTCCTAACAAAGTCCCACAAGGTCGCCGCCAAGCTCGTCAAGGCCTTCACCGATCACAAGGTTAAGAAAACTTACATTGCCCTCTGCACTGGTCCTCCTCCAAATTGGGAACGGGTCACCCTCAGATCCGGTCACGGTAGGTCCAAGTTCGGCGCCTGGCGAGTCTACGCTGCCTCCGACGTCGGGCGTGCGCTACCGGGCGGCTCGGTTGTCCGCTCCATGGAGACTTCCTTCGAGTTGTTATCGGTAAACAGAAAAGGGAACTTCAGGGAAGTCTCTGATTCAGAATTCGGGAACGTTGAGGGTGAAAATGTCTTAGTGGTTGAAGAAAAGGCGGTGAAAGAGGATGGTAACAACGAGAGCGAGATAGTGGTGAGAGCGTATCCTCGGAGTGGAAGAACGCATCAGATTCGGTTGCACTGTCAATACCTAGGGATTTCTATAGTGGGAGATGTGAAATATGAGGGTGTGTACGAGTGGAAAGGCACCACTCATCATGCACATCACCTTCACGCAGAAACCTTGTCATTTGAACATCCTGTTACTGGTCTTCACGTTAAGCTACGTGCTCCTCTACCACCATGGGCAACTCACGCGTTTCAGCCTTGA
>Glyma20g23060.2 sequence type=predicted peptide gene model=Glyma20g23060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSVNPKPFSAVAVAMSGSHSQQAQPKSPIPTENYPVPLSPPLPPISKQLELSRAMSAASNSSLFSLSPADILYHDDHLIAVNKHPGIYCETLLSSLASQSHQLHLANRLDRDTTGVLLLTKSHKVAAKLVKAFTDHKVKKTYIALCTGPPPNWERVTLRSGHGRSKFGAWRVYAASDVGRALPGGSVVRSMETSFELLSVNRKGNFREVSDSEFGNVEGENVLVVEEKAVKEDGNNESEIVVRAYPRSGRTHQIRLHCQYLGISIVGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGLHVKLRAPLPPWATHAFQP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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