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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G26820 | AT | Annotation by Michelle Graham. TAIR10: iron-regulated protein 3 | chr5:9433858-9437005 FORWARD LENGTH=598 | SoyBase | E_val: 3.00E-69 | ISS |
| GO:0006879 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular iron ion homeostasis | SoyBase | N/A | ISS |
| GO:0034755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005381 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR11660 | Panther | TRANSPOSASE | JGI | ISS | |
| PTHR11660:SF1 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF06963 | PFAM | Ferroportin1 (FPN1) | JGI | ISS | |
| UniRef100_B9N487 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ferroportin protein family n=1 Tax=Populus trichocarpa RepID=B9N487_POPTR | SoyBase | E_val: 9.00E-73 | ISS |
| UniRef100_I1NEY5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEY5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g22870 not represented in the dataset |
Glyma20g22870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g28760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g096400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g22870.1 sequence type=CDS gene model=Glyma20g22870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAACGGTTGTTTGTTTGTTATCTCCTTCTGTTTTATTGGTTACAGATTTGCGTGTTGGCACTGATGTGCATTTGGATCATGTTGCCACGGATGGGGATGGGGATGAGGGTCAGGGAAGAGGGGTGGTTGAGCCTCACTGCCCGGTGCCATTTGTTAAACTCAATACTGATATTCTCGAGGCCGAGTCTTTGAACTTGCTCGCCGAAGCCACAGTTGTTTTGTCAGAAGAGGAGCAACATGCCCCCTTTCAGCTACTCCGCCTCACCCGGCTGGTTTACACGTTGCTTAACTGCAAATGTAGTGGAGCAGCTTTGAAATTTTGCTTGGCTTTCTGCCATTGCCCTGATTCATCCAAGCCTTTTGCCAGTTGCTGTGATGGGTTTCTTCACCAAAGTGGCTATAATTGTTGGTGGTCCCTTGGTTGGCAAACTTATGGACCATTTTCCAAGAATGCAGCAGCTCAGTTGCTATCTGCAGCGATGATTATTCATGCCCATTCTGTGCAACCTACTTCATTTTCTACACTGCTTCTGCGTCCATGGTTTGTCGTATTGGTTTCAGCTTGGGCTATTGAGAGGCTTTGTGTAGTAGCTTTGGGGGTTGCAAATGAGCGTGATTGGATTGTGCTGGTATTGTCATTCAGAACTTTGTCTGTTCCCTTGACATTTCCATCTACTGGCAAACCAGTGTTTAAAGGTCTGGAAGCCATCAAGCTCGGCTGGAAGGAGTATCTGGGTCAGCCTGTTCTCCTTGCTAGTCTTGCATGGGTGTTCCTCTACTTTAACATTGTTCTCATGCCAGGCAGTTTGTTGACAGCATTTTTAACACAGCGTGGCTTACATCCGTCAATCATTGGAGGATTCAGTGGAATGTGTGCTTTAATGGGTGTTGCAGCAACATTTGTGCCTTCAACTCTGGTCAAGCAATTTGGCATTTTAAAGGCTGGAGCAGTTGGGTTGGTATTTCAAGCTTTACTTCTCAGCATGGCTGTTGCTGTATATTGGAGTGGAACAATTTCTCATCAGAGCCCCCTTCTTACCTTCTTATTTCTGATTGACACATGTCATAATGTTGTAGGGGCGCAGATTCTCCAGACAGGAATCCCATCATCCAAAGCAAATCTCATTGGGATGACAGAGATTGCTGTTGCTAGTTTGGTGGAGTCTATAATGCTGGGTCACTGCTGTCTCTTCTATCAATGGCTGTTGAATCCAACAGATGAACAAAAAAGCCTTTTTTTCTTATGA
>Glyma20g22870.1 sequence type=predicted peptide gene model=Glyma20g22870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTVVCLLSPSVLLVTDLRVGTDVHLDHVATDGDGDEGQGRGVVEPHCPVPFVKLNTDILEAESLNLLAEATVVLSEEEQHAPFQLLRLTRLVYTLLNCKCSGAALKFCLAFCHCPDSSKPFASCCDGFLHQSGYNCWWSLGWQTYGPFSKNAAAQLLSAAMIIHAHSVQPTSFSTLLLRPWFVVLVSAWAIERLCVVALGVANERDWIVLVLSFRTLSVPLTFPSTGKPVFKGLEAIKLGWKEYLGQPVLLASLAWVFLYFNIVLMPGSLLTAFLTQRGLHPSIIGGFSGMCALMGVAATFVPSTLVKQFGILKAGAVGLVFQALLLSMAVAVYWSGTISHQSPLLTFLFLIDTCHNVVGAQILQTGIPSSKANLIGMTEIAVASLVESIMLGHCCLFYQWLLNPTDEQKSLFFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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