Report for Sequence Feature Glyma20g22830
Feature Type: gene_model
Chromosome: Gm20
Start: 32732484
stop: 32736569
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g22830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G09280 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). | chr1:2998209-3001253 REVERSE LENGTH=581
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2551
KOG
Phospholipase/carboxyhydrolase
JGI ISS
PTHR18838 Panther
RHODANESE-LIKE DOMAIN-CONTAINING
JGI ISS
PTHR18838:SF15 Panther
UNCHARACTERIZED
JGI ISS
PF00581 PFAM
Rhodanese-like domain
JGI ISS
PF03959 PFAM
Serine hydrolase (FSH1)
JGI ISS
UniRef100_Q94AC1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Rhodanese-like domain-containing protein 6 n=1 Tax=Arabidopsis thaliana RepID=STR6_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233EECD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EECD related cluster n=1 Tax=unknown RepID=UPI000233EECD
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g22830
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g22830
Paralog Evidence Comments
Glyma10g28700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g22830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g095800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g22830
Coding sequences of Glyma20g22830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g22830.2 sequence type=CDS gene model=Glyma20g22830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCGAAGAAATGTACGGCGTGCTCCTTTATTACAAGTACGCTGAAATTCCCAACCTCGACGACCTCCTCACTTTCTACCACTCCAACTGCTCCTCCCTCAGCCTCCTCGGTCGTGTTCGGCTTTCTTCCCGCGGCGTCAATGTCACCGTTGGCGGCAACTTATCCTCTCTCGAGATCCACATCGAAGCCCTCAAAGCCTACAACTCTCTGTTTCACGACACTGATTTCAAGCTCGCCAATTGTCATCAGCCATTAAACGACAAAGTAGCCCAGGAATGTGGATTCACTTCTCTATCTATTCGGATCGTCGATGAACTTGTCACTCTCAGTTCTCATCCGCTGTTAAAGTCACCGGATATCTCAAATGCCGGAAAGCATCTCTCTGCACTTGACTTCCATTCTTCCCTCCACAATACCAACAGGGAGAGTCCAGAAAATGACCTTGTTTTACTTGATGCAAGGAATCTGTATGAAACAAGAATTGGCAAATTTCATGTGCCTAATATTGAAACTTTGGATCCACAAGTTAGGCAGTATAGTGATTTGTCCTCTTGGATAGATGATAACGGTGAGCGGTTGAAAGGAAAAAATATCCTCATGTATTGTACTGGTGGAATCAGATGTGAAATGGCATCGGCATATATTAGGTCAAAAGGTGCTGGGTTTGAGAATGTGTTTCAGTTATTTGGTGGCATACAGCGGTATTTGGAGCAATTCCCAGATGGTGGGTTTTTCAAAGGAAAGAATTTTGTTTTTGATCACCGGATATCAGTTGGAAGTTCAGATGCTAATGTTATTGGGACCTGCCTTATTTGTCAATGTTCATTTGATGATTACTCGTCTCGCTGCCGGTGTGCTTACTGCCGAATGCTTGTTTTGGTTTGTGGTAGTTGCCAGAATGAATCTACACAGTACGTTTGTGAGCTTTGTCAGAAACAGGGCAAGGTCGTTAGGTCAACACAATTAATTGAAAATGGTGAATCAAAATCATCATTGCCAGGTGCCGAATTCCAGAATTTTTCTTCAGATACTATGTGTTTGCCTCAAGTGCCTAGGGGAGATGATCCAAGGACCTCAAGAAAACTGAGAATCTTGTGCTTGCATGGGTTCCGACAGAATGCATCCAGTTTCAAAGGCAGAACAGCATCACTAGCCAAGAAACTCAAGAAAATGGCTGAATTTGTTTTTATCAATGCTCCTCATGAATTGCCATTCATTTACCAAATCCCCGTGTCCGAGCTCAATGTGAATTGTGCATCATCATTGCCACCTAGTCCTCCTCCACCTTTGGAGAATTGCAAGAAGAAGTTTGCATGGTTTTTGGCACCCAACTTTGATGGAAGTAGTGGTGTTGATTGGAAGGTAGCAGACGGTCCATTCGATGCACTTCAATACCAGCAGCAAACTGATGGATATGATATTTCTGTATCACACTTGAAGAATGTGTTTTCCCAACAAGGACCATTCGATGGAATCTTGGGATTTTCACAGGGAGCAGCAATGGCTGCCTTAATCTCTGCACAACAAGAAAAGCTGAAAGGTGAAATGGACTTTAAATTTGTAGTCCTGTGCTCTGGCTTTGCTCTCCGGATGAAAGAGATGGAGTGTGGCCCTATCAAGTGCCCGTCTCTTCATATTTTTGGTAATGAGCATGGTAAAGACAGACAAATAGCTAACCAAGCTAGCAAGGAACTTGTTTCTCTATATGATAGTGATTGTTCTGGGATCGTTGAGCATGATTGTGGTCATATAATTCCTACCCGGTCCCCTTACATTGATGGGATCAAGGATTTCCTTGGGCGTTTTCTGTAA
Predicted protein sequences of Glyma20g22830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g22830.2 sequence type=predicted peptide gene model=Glyma20g22830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEEMYGVLLYYKYAEIPNLDDLLTFYHSNCSSLSLLGRVRLSSRGVNVTVGGNLSSLEIHIEALKAYNSLFHDTDFKLANCHQPLNDKVAQECGFTSLSIRIVDELVTLSSHPLLKSPDISNAGKHLSALDFHSSLHNTNRESPENDLVLLDARNLYETRIGKFHVPNIETLDPQVRQYSDLSSWIDDNGERLKGKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGFFKGKNFVFDHRISVGSSDANVIGTCLICQCSFDDYSSRCRCAYCRMLVLVCGSCQNESTQYVCELCQKQGKVVRSTQLIENGESKSSLPGAEFQNFSSDTMCLPQVPRGDDPRTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKMAEFVFINAPHELPFIYQIPVSELNVNCASSLPPSPPPPLENCKKKFAWFLAPNFDGSSGVDWKVADGPFDALQYQQQTDGYDISVSHLKNVFSQQGPFDGILGFSQGAAMAALISAQQEKLKGEMDFKFVVLCSGFALRMKEMECGPIKCPSLHIFGNEHGKDRQIANQASKELVSLYDSDCSGIVEHDCGHIIPTRSPYIDGIKDFLGRFL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
