Glyma20g22820 - SoyBase

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Report for Sequence Feature Glyma20g22820

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32720141
stop:	32732107
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g22820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09300	AT	Annotation by Michelle Graham. TAIR10: Metallopeptidase M24 family protein \| chr1:3003981-3008131 FORWARD LENGTH=493	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009987	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004177	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity	SoyBase	N/A	ISS
GO:0008235	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloexopeptidase activity	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
KOG2414	KOG	Putative Xaa-Pro aminopeptidase	JGI		ISS
PTHR10804	Panther	PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P)	JGI		ISS
PTHR10804:SF8	Panther	XAA-PRO DIPEPTIDASE	JGI		ISS
PF00557	PFAM	Metallopeptidase family M24	JGI		ISS
PF05195	PFAM	Aminopeptidase P, N-terminal domain	JGI		ISS
UniRef100_B9RFL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xaa-pro dipeptidase, putative n=1 Tax=Ricinus communis RepID=B9RFL1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NEY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEY0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g22820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g22820

Paralog	Evidence	Comments
Glyma10g28690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g22820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g095700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g22820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g22820

Limit To All Plant Sequences

>Glyma20g22820.2   sequence type=transcript   gene model=Glyma20g22820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACAATAATTTATAGACGGAACATAAGTTGGACAAAAACAACGGGTACGAGTACGAGACACAAATCAAGTGACTGCAACTCTTAAACCCTTTGTAGTTTAAACCTCTGGTCTAGTCTGGTGCTTATTGTTGAAAACAACACAAAGGAGCTCCTACGAAGATGCAGGGTGCCGTAAGAAAACTAACCAGGATAATTTCACACAGACAAGTTGTAGGTTTTCGTTCCTATTGCACTGACAAGGTTGTTGTTGATATTGGACAACCAACCTCCGCGTCTCATCCGCAGCTACTAAAAGATGGGGATCTCACACCGGGTATATCTACGGAGGAATACATCCTAAGAAGAAAAAAGTTATTGGATCTTCTCCCAGAGAAGAGTTTGGCAATCATTGCTGCTGCCCCAGTAAAGATGATGACAGATGTTGTGCCTTACACATTTCGACAAGATGCTGATTACTTGTATATCACAGGCTGTCAACAACCTGGTGGTGTGGCCGTTTTAGGACATGACTGTGGTTTATGCATGTTCATGCCAGAAGCTAAGCCTAATGATGTGATTTGGCAAGGGCAGATAGCAGGAGTTGATGCAGCATTAGATGCATTCAAGGCTGACAAGGCATATCCAATGAAAAAATTGCAAGAGATCCTTCCAGATATGATAAGGGGATCATCAAAATTGTTCCACAATGTAGAGACTGCAACTCCAGCATATATGGAACTGGAAGCCTTCAAAACGCTAGCTTACTGTAACAATGTAAGGGATCTAACTGTTTATACCCATCAACTGCGATGGATAAAGTCACCAGCAGAGCTCAAGCTGATGAAGGAATCTGCATCAATTGCTTGTCAGGCTCTTTTGTTGACAATGCTACATTCAAAGACATACCCTTTTGAAGGTATGCTAGCGGCAAAGGTTGAATATGAATGCAAAATTAGAGGTGCTCAGCGGATGGGATTCAATCCTGTGGTTGGTGGTGGGCCTAATGGAAGTGTTATACATTATTCTAGGAATGATCAGAGAATTAAACATGGAGACCTTGTTTTGATGGATGTTGGATGTGAGTTACATGGTTATGCCAGTGATCTTACTCGTACCTGGCCACCTTGTGGTAGCTTTTCTTCTGCTCAGGAGGAGCTTTATGCGCTTATACTGGAAACAAATAAGCATTGTGTGGAACTTTGTAAGCCGGGTGCCAGTATTCGGCACATACACAACCATTCGGTTGAAATGCTGCAGAAAGGACTCAAAGAGCTTGGGATTTTGAGAGATGTTGGAAGCAGTTCCTACCATAAGCTGAACCCAACTTCTATAGGTCACTATCTAGGGATGGACATTCATGATTGTTCAATGGTTAGCAATGACTGTCCTCTGAAGCCAGGTGTTGTAATAACTATTGAACCAGGAGTGTACATCCCATCTTCTTTTAATGTTCCAGAGAGCTAAATCTACTAAAGAATGCGAATTCGTGGGACTTTGTTTCCCTTGACTAGCTCCAAAAATTTTACCTTTCATTTTT

Coding sequences of Glyma20g22820

Limit To All Plant Sequences

>Glyma20g22820.1   sequence type=CDS   gene model=Glyma20g22820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGGTGCCGTAAGAAAACTAACCAGGATAATTTCACACAGACAAGTTGTAGGTTTTCGTTCCTATTGCACTGACAAGGTTGTTGTTGATATTGGACAACCAACCTCCGCGTCTCATCCGCAGCTACTAAAAGATGGGGATCTCACACCGGGTATATCTACGGAGGAATACATCCTAAGAAGAAAAAAGTTATTGGATCTTCTCCCAGAGAAGAGTTTGGCAATCATTGCTGCTGCCCCAGTAAAGATGATGACAGATGTTGTGCCTTACACATTTCGACAAGATGCTGATTACTTGTATATCACAGGCTGTCAACAACCTGGTGGTGTGGCCGTTTTAGGACATGACTGTGGTTTATGCATGTTCATGCCAGAAGCTAAGCCTAATGATGTGATTTGGCAAGGGCAGATAGCAGGAGTTGATGCAGCATTAGATGCATTCAAGGCTGACAAGGCATATCCAATGAAAAAATTGCAAGAGATCCTTCCAGATATGATAAGGGGATCATCAAAATTGTTCCACAATGTAGAGACTGCAACTCCAGCATATATGGAACTGGAAGCCTTCAAAACGCTAGCTTACTGTAACAATGTAAGGGATCTAACTGTTTATACCCATCAACTGCGATGGATAAAGTCACCAGCAGAGCTCAAGCTGATGAAGGAATCTGCATCAATTGCTTGTCAGGCTCTTTTGTTGACAATGCTACATTCAAAGACATACCCTTTTGAAGGTATGCTAGCGGCAAAGGTTGAATATGAATGCAAAATTAGAGGTGCTCAGCGGATGGGATTCAATCCTGTGGTTGGTGGTGGGCCTAATGGAAGTGTTATACATTATTCTAGGAATGATCAGAGAATTAAACATGGAGACCTTGTTTTGATGGATGTTGGATGTGAGTTACATGGTTATGCCAGTGATCTTACTCGTACCTGGCCACCTTGTGGTAGCTTTTCTTCTGCTCAGGAGGAGCTTTATGCGCTTATACTGGAAACAAATAAGCATTGTGTGGAACTTTGTAAGCCGGGTGCCAGTATTCGGCACATACACAACCATTCGGTTGAAATGCTGCAGAAAGGACTCAAAGAGCTTGGGATTTTGAGAGATGTTGGAAGCAGTTCCTACCATAAGCTGAACCCAACTTCTATAGGTCACTATCTAGGGATGGACATTCATGATTGTTCAATGGTTAGCAATGACTGTCCTCTGAAGCCAGGTGTTGTAATAACTATTGAACCAGGAGTGTACATCCCATCTTCTTTTAATGTTCCAGAGAGGTATCGAGGCATTGGGATACGGATTGAGGATGAGGTTCTCATCACAGAAACTGGTTATGAGGTCCTAACAGCATCAATCCCAAAAGAAGTGAAGCATATTGAGTCCTTGCTGAACAATTTCTGCCATGGAATGGGAGCGATGGACAGCCAAAACAACTAA

>Glyma20g22820.2   sequence type=CDS   gene model=Glyma20g22820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGGTGCCGTAAGAAAACTAACCAGGATAATTTCACACAGACAAGTTGTAGGTTTTCGTTCCTATTGCACTGACAAGGTTGTTGTTGATATTGGACAACCAACCTCCGCGTCTCATCCGCAGCTACTAAAAGATGGGGATCTCACACCGGGTATATCTACGGAGGAATACATCCTAAGAAGAAAAAAGTTATTGGATCTTCTCCCAGAGAAGAGTTTGGCAATCATTGCTGCTGCCCCAGTAAAGATGATGACAGATGTTGTGCCTTACACATTTCGACAAGATGCTGATTACTTGTATATCACAGGCTGTCAACAACCTGGTGGTGTGGCCGTTTTAGGACATGACTGTGGTTTATGCATGTTCATGCCAGAAGCTAAGCCTAATGATGTGATTTGGCAAGGGCAGATAGCAGGAGTTGATGCAGCATTAGATGCATTCAAGGCTGACAAGGCATATCCAATGAAAAAATTGCAAGAGATCCTTCCAGATATGATAAGGGGATCATCAAAATTGTTCCACAATGTAGAGACTGCAACTCCAGCATATATGGAACTGGAAGCCTTCAAAACGCTAGCTTACTGTAACAATGTAAGGGATCTAACTGTTTATACCCATCAACTGCGATGGATAAAGTCACCAGCAGAGCTCAAGCTGATGAAGGAATCTGCATCAATTGCTTGTCAGGCTCTTTTGTTGACAATGCTACATTCAAAGACATACCCTTTTGAAGGTATGCTAGCGGCAAAGGTTGAATATGAATGCAAAATTAGAGGTGCTCAGCGGATGGGATTCAATCCTGTGGTTGGTGGTGGGCCTAATGGAAGTGTTATACATTATTCTAGGAATGATCAGAGAATTAAACATGGAGACCTTGTTTTGATGGATGTTGGATGTGAGTTACATGGTTATGCCAGTGATCTTACTCGTACCTGGCCACCTTGTGGTAGCTTTTCTTCTGCTCAGGAGGAGCTTTATGCGCTTATACTGGAAACAAATAAGCATTGTGTGGAACTTTGTAAGCCGGGTGCCAGTATTCGGCACATACACAACCATTCGGTTGAAATGCTGCAGAAAGGACTCAAAGAGCTTGGGATTTTGAGAGATGTTGGAAGCAGTTCCTACCATAAGCTGAACCCAACTTCTATAGGTCACTATCTAGGGATGGACATTCATGATTGTTCAATGGTTAGCAATGACTGTCCTCTGAAGCCAGGTGTTGTAATAACTATTGAACCAGGAGTGTACATCCCATCTTCTTTTAATGTTCCAGAGAGCTAA

Predicted protein sequences of Glyma20g22820

Limit To All Plant Sequences

>Glyma20g22820.1   sequence type=predicted peptide   gene model=Glyma20g22820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGAVRKLTRIISHRQVVGFRSYCTDKVVVDIGQPTSASHPQLLKDGDLTPGISTEEYILRRKKLLDLLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYITGCQQPGGVAVLGHDCGLCMFMPEAKPNDVIWQGQIAGVDAALDAFKADKAYPMKKLQEILPDMIRGSSKLFHNVETATPAYMELEAFKTLAYCNNVRDLTVYTHQLRWIKSPAELKLMKESASIACQALLLTMLHSKTYPFEGMLAAKVEYECKIRGAQRMGFNPVVGGGPNGSVIHYSRNDQRIKHGDLVLMDVGCELHGYASDLTRTWPPCGSFSSAQEELYALILETNKHCVELCKPGASIRHIHNHSVEMLQKGLKELGILRDVGSSSYHKLNPTSIGHYLGMDIHDCSMVSNDCPLKPGVVITIEPGVYIPSSFNVPERYRGIGIRIEDEVLITETGYEVLTASIPKEVKHIESLLNNFCHGMGAMDSQNN*

>Glyma20g22820.2   sequence type=predicted peptide   gene model=Glyma20g22820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGAVRKLTRIISHRQVVGFRSYCTDKVVVDIGQPTSASHPQLLKDGDLTPGISTEEYILRRKKLLDLLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYITGCQQPGGVAVLGHDCGLCMFMPEAKPNDVIWQGQIAGVDAALDAFKADKAYPMKKLQEILPDMIRGSSKLFHNVETATPAYMELEAFKTLAYCNNVRDLTVYTHQLRWIKSPAELKLMKESASIACQALLLTMLHSKTYPFEGMLAAKVEYECKIRGAQRMGFNPVVGGGPNGSVIHYSRNDQRIKHGDLVLMDVGCELHGYASDLTRTWPPCGSFSSAQEELYALILETNKHCVELCKPGASIRHIHNHSVEMLQKGLKELGILRDVGSSSYHKLNPTSIGHYLGMDIHDCSMVSNDCPLKPGVVITIEPGVYIPSSFNVPES*

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