Glyma20g22800 - SoyBase

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Report for Sequence Feature Glyma20g22800

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32703841
stop:	32708528
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g22800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56570	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:21195804-21197721 FORWARD LENGTH=611	SoyBase	E_val: 0	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7I9I3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7I9I3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EECC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EECC related cluster n=1 Tax=unknown RepID=UPI000233EECC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g22800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g22800

Paralog	Evidence	Comments
Glyma10g28661	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g22800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g095400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g22800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g22800

Limit To All Plant Sequences

>Glyma20g22800.1   sequence type=CDS   gene model=Glyma20g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCAGAGAAACGTAGTCACCTGGACGGCCATGATCACCAGCAACAACTCCCGCAACAATCATATGCGTGCATGGAGTGTGTTTCCTCAAATGCTCAGAGATGGGGTGAAAGCTCTTTCATGTGGCCAGTTAGTTCATTCTTTGGCCATCAAGATTGGTGTCCAAGGATCATCCGTATATGTTGATAATTCACTAATGGATATGTATGCCACTTGCTGTGATAGTATGGACCGTGCAAGAATGGTTTTTGATGATATCACTACCAAGACTGATGTCTGTTGGACTACATTGATCACTGGGTACACTCATAGAGGAGATGCCTATGGTGGTCTTCGAGTTTTCCGTCAAATGTTTCTGGAGGAAGGAGCGTTAAGCCTCTTCAGCTTCTCAATTGCAGCTAGAGCTTGTGCCTCAATTGGCTCAGGTATTTTAGGCAAGCAGGTTCATGCTGAAGTGGTTAAGCATGGATTTGAGTCCAACCTTCCTGTCATGAATTCCATACTGGACATGTACTGCAAGTGTCATTGTGAATCTGAGGCAAAACGATTATTCTCTGTTATGACTCATAAAGATACCATCACATGGAATACCTTGATAGCTGGATTTGAAGCATTGGATTCCAGAGAGTCTCTATGCATATTTTCACGAATGGTGTCAGAAGTAGGTGCATGTGCTAACTTGGCAGTTCTGTATTGCGGGCAACAGCTTCATGGTGTAATTGTTCGTAGCGGCCTGGATAACTACTTAGAAATATCCAATGCCCTTATTTATATGTATGCCAAGTGTGGAAATATAGCTGATTCACGTAAAATATTTAGCAAAATGCCGTGCACAAATTTGGTCTCCTGGACTTCAATGATAAATGGATATGGGGATCATGGATATGGTAAAGATGCTGTTGAGTTATTCAATGAAATGATCAGATCAGATAAGATGGTGTTTATGGCAGTTCTAAGTGCTTGTAGCCATGCTGGTCTAGTGGACGAAGGGCTGAGATATTTTAGATTAATGACCAGTTATTATAATATAACACCAGATATAGAGATATATGGCTGCGTGGTGGATTTGTTTGGTCGTGCTGGAAGAGTGAAGGAAGCTTATCAACTAATAGAGAATATGCCATTTAATCCAGATGAATCTATCTGGGCAGCCCTTCTTGGAGCTTGTAAAGTGCATAACCAACCCAGTGTGGCCAAATTTGCAGCTTTGAGAGCTTTGGATATGAAGCCAATTAGTGCAGGAACTTATGCGTTGATATCAAATATTTATGCCGCTGAAGGAAACTGGGATGATTTTGCCAGCTCAACGAAGCTGAGGAGAGGCATTAAAAATAAAAGTGACTCGGGGAGGAGCTGGATTGAATTGAAAGACCAGATTTGCAGTTTTGTTGTTGGAGACAGATTTGTCTCTTCCAATGAACAGGTGTGTGAAGTTCTGAAATTGTTGATGGTGCATATGAAAGATGCTGATATGGACCTGATTTAG

Predicted protein sequences of Glyma20g22800

Limit To All Plant Sequences

>Glyma20g22800.1   sequence type=predicted peptide   gene model=Glyma20g22800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQRNVVTWTAMITSNNSRNNHMRAWSVFPQMLRDGVKALSCGQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCWTTLITGYTHRGDAYGGLRVFRQMFLEEGALSLFSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSVMTHKDTITWNTLIAGFEALDSRESLCIFSRMVSEVGACANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIFSKMPCTNLVSWTSMINGYGDHGYGKDAVELFNEMIRSDKMVFMAVLSACSHAGLVDEGLRYFRLMTSYYNITPDIEIYGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLGACKVHNQPSVAKFAALRALDMKPISAGTYALISNIYAAEGNWDDFASSTKLRRGIKNKSDSGRSWIELKDQICSFVVGDRFVSSNEQVCEVLKLLMVHMKDADMDLI*

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