Glyma20g22790 - SoyBase

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Report for Sequence Feature Glyma20g22790

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32691289
stop:	32693574
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g22790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17760	AT	Annotation by Michelle Graham. TAIR10: damaged DNA binding;exodeoxyribonuclease IIIs \| chr4:9871820-9873257 FORWARD LENGTH=300	SoyBase	E_val: 6.00E-156	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0008853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: exodeoxyribonuclease III activity	SoyBase	N/A	ISS
KOG3194	KOG	Checkpoint 9-1-1 complex, RAD1 component	JGI		ISS
PTHR10870	Panther	RAD1 DNA DAMAGE CHECKPOINT PROTEIN	JGI		ISS
PF02144	PFAM	Repair protein Rad1/Rec1/Rad17	JGI		ISS
UniRef100_B9SNU5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rad1 DNA damage checkpoint protein, putative n=1 Tax=Ricinus communis RepID=B9SNU5_RICCO	SoyBase	E_val: 5.00E-169	ISS
UniRef100_I1NEX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEX4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g22790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g22790

Paralog	Evidence	Comments
Glyma10g28650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g22790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g095300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g22790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g22790

Limit To All Plant Sequences

>Glyma20g22790.4   sequence type=transcript   gene model=Glyma20g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACAACTCACTCATGGAGGAGGAAGAAGCCCCAGACGTTATATGCGAGCTGGAAAACGTTCAAGGCTTAGTGGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGTTGTCCGAACACGGCATTGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGTTATTCATTCGTTACGATTACAACGCACGAGGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTAGATTGCTTGAACGCCTTCTCGGTTCCTGCTGGTCAATCAATATCAAGCCTTGTTCAGATTCAATATCCGGGTCCTGACATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGGCAAACCCTTTAACCTTTACTGTTAAATCTGCAGCTCTGAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCAAGATTACTCTAGAGCCAGATCCTCCTTCTGTTTCATTAAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGAACTCCTGGTGGCATTTCAGTGTGATCATCAAGCTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATGCCTAGCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTCCAGCATCTGGTTTCAATTGCCAAACCATCTGTGTCACACCCATATGCTGATTCGGTTGGCTATCAGCAACCAAGTAGAATAGCTCATATTGAATTCTTTGTGAAACCAGAGGAAAGTGAGGACTGAGTGAATGATTATTAGTTACTATAAAGACTCCGTCAAGTTTTGCTATGCAAACCATTAACTTCGCAAAAGAATTACAAAATGGTTTGTATTCAGAATGTTGATCAAAGAGGTATTTTGCAGAAAAATCCTCGTTTAATCTGAGTTTTAGACGGAACAAGCTTGGTAAGGCCACTGAAACTTAAAACAGAATCGTAGCAATGTTGCTCAGATTTTGAAATTTTTGATGCATAGTTCAGGATTATTTTATCCC

Coding sequences of Glyma20g22790

Limit To All Plant Sequences

>Glyma20g22790.1   sequence type=CDS   gene model=Glyma20g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAAGAAGCCCCAGACGTTATATGCGAGCTGGAAAACGTTCAAGGCTTAGTGGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGGACGCCGTGTTGGAGTTGTCCGAACACGGCATTGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGTTATTCATTCGTTACGATTACAACGCACGAGGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTAGATTGCTTGAACGCCTTCTCGGTTCCTGCTGGTCAATCAATATCAAGCCTTGTTCAGATTCAATATCCGGGTCCTGACATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGGCAAACCCTTTAACCTTTACTGTTAAATCTGCAGCTCTGAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCAAGATTACTCTAGAGCCAGATCCTCCTTCTGTTTCATTAAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGAACTCCTGGTGGCATTTCAGTGTGATCATCAAGCTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATGCCTAGCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTCCAGCATCTGGTTTCAATTGCCAAACCATCTGTGTCACACCCATATGCTGATTCGGTTGGCTATCAGCAACCAAGTAGAATAGCTCATATTGAATTCTTTGTGAAACCAGAGGAAAGTGAGGACTGA

>Glyma20g22790.4   sequence type=CDS   gene model=Glyma20g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAAGAAGCCCCAGACGTTATATGCGAGCTGGAAAACGTTCAAGGCTTAGTGGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGTTGTCCGAACACGGCATTGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGTTATTCATTCGTTACGATTACAACGCACGAGGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTAGATTGCTTGAACGCCTTCTCGGTTCCTGCTGGTCAATCAATATCAAGCCTTGTTCAGATTCAATATCCGGGTCCTGACATGCAGCTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGGCAAACCCTTTAACCTTTACTGTTAAATCTGCAGCTCTGAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCAAGATTACTCTAGAGCCAGATCCTCCTTCTGTTTCATTAAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGAACTCCTGGTGGCATTTCAGTGTGATCATCAAGCTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATGCCTAGCAGTGTTATTAAAGAAAATAGAGGAAGTAAGTTAAGCATTGGGAGAGGTGGAATGTTAAAAGTCCAGCATCTGGTTTCAATTGCCAAACCATCTGTGTCACACCCATATGCTGATTCGGTTGGCTATCAGCAACCAAGTAGAATAGCTCATATTGAATTCTTTGTGAAACCAGAGGAAAGTGAGGACTGA

Predicted protein sequences of Glyma20g22790

Limit To All Plant Sequences

>Glyma20g22790.1   sequence type=predicted peptide   gene model=Glyma20g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEEAPDVICELENVQGLVDALTAVRWKRQQDAVLELSEHGIVLIVEESGCLQAKVYLKRELFIRYDYNARGGRPRFGVSLGHFVDCLNAFSVPAGQSISSLVQIQYPGPDMQLLLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAALKEAIEDLEWPGSSIKITLEPDPPSVSLRAEGHGDLQIDFMYYVNSELLVAFQCDHQASFKYKYKFLRATTSNMPSSVIKENRGSKLSIGRGGMLKVQHLVSIAKPSVSHPYADSVGYQQPSRIAHIEFFVKPEESED*

>Glyma20g22790.4   sequence type=predicted peptide   gene model=Glyma20g22790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEEAPDVICELENVQGLVDALTAVRWKRQQLSEHGIVLIVEESGCLQAKVYLKRELFIRYDYNARGGRPRFGVSLGHFVDCLNAFSVPAGQSISSLVQIQYPGPDMQLLLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGANPLTFTVKSAALKEAIEDLEWPGSSIKITLEPDPPSVSLRAEGHGDLQIDFMYYVNSELLVAFQCDHQASFKYKYKFLRATTSNMPSSVIKENRGSKLSIGRGGMLKVQHLVSIAKPSVSHPYADSVGYQQPSRIAHIEFFVKPEESED*

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