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Report for Sequence Feature Glyma20g22741

Feature Type:gene_model
Chromosome:Gm20
Start:32648822
stop:32650871
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g22741
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G48790AT Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF1995) | chr5:19780010-19781977 REVERSE LENGTH=316 SoyBaseE_val: 2.00E-101ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF09353PFAM Domain of unknown function (DUF1995) JGI ISS
UniRef100_I1J818UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J818_SOYBN SoyBaseE_val: 1.00E-125ISS
UniRef100_Q94F50UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT5g48790/K24G6_12 n=1 Tax=Arabidopsis thaliana RepID=Q94F50_ARATH SoyBaseE_val: 7.00E-99ISS

Expression Patterns of Glyma20g22741
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g22741 not represented in the dataset
Glyma20g22741 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g22741 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g094800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g22741
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g22741
>Glyma20g22741.1   sequence type=CDS   gene model=Glyma20g22741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAGTTTCATTTTTTTGGTTTGAGCCCTGTTTTATCATTGTTTCAATCTAAATGGAAATTGATTCATCTCACTCGTTACATCACAGGTGATGGGGAAGGTGGAATTGAAATGACTGAGAGCATGCAATTGATTCGTGAATTTTGTGACCGCTTCATTAGTTCAGAGAAAGTCACACGAACAAGAATATTGGACTATTTGACAAAGCCTTCATTTTTTGAAGATTTTGGCTTTGTTGAGAAAATAAAAATGTCAGACAGGGTGAAGACCGGAGATGAACTTTTCTTGGTTGGCTACCCATATTTTAATGTCAATGTATCAAGATTACTGCTCCCTTGTATTTCAGAAATGCTCGTTGTGGAAGAACTTTATAAAGAGGCGGTCTTGAACACTGAACGGAAACTGATTATATTCAATGGAGAACTCGATCGCATAAGATCTGGATATTATCCATCATTCTTCTACCCAAAGCTTGCTGCACTTACGAAGTCCTTCCTACCTATGATGGAAACTGTGTATTACATTCATAATTTCAAGGGCCGCAATGGAGGAACACTTTTTAGGTGCTATCCAGGACTCTGGAAGGTCCTTAGAAGAGTGGGGAATAGGAAATATGTTTGTCTACATCAGCAGAATAGTATGCCATCCCTCAAGGAAGTTGCCCTTGAGATTCTTCCATCTGCTTGA
Predicted protein sequences of Glyma20g22741
>Glyma20g22741.1   sequence type=predicted peptide   gene model=Glyma20g22741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQFHFFGLSPVLSLFQSKWKLIHLTRYITGDGEGGIEMTESMQLIREFCDRFISSEKVTRTRILDYLTKPSFFEDFGFVEKIKMSDRVKTGDELFLVGYPYFNVNVSRLLLPCISEMLVVEELYKEAVLNTERKLIIFNGELDRIRSGYYPSFFYPKLAALTKSFLPMMETVYYIHNFKGRNGGTLFRCYPGLWKVLRRVGNRKYVCLHQQNSMPSLKEVALEILPSA*






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